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SRR1747022_scaffold_43_prodigal-single.1__X__X__00170
Bact-VirSRR1747022_scaffold_43_prodigal-single.1__X__X__00170
Identity
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-90
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13479.13 best | AAA_24 | 38.1 | 2.00e-09 | 100.0% | 29.2% |
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l82A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.75 | 65.0 | 4.79e-01 | 100.0% | 44.4% |
| 2n3zA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.74 | 59.0 | 4.93e-01 | 86.4% | 52.5% |
| 2d00A01 | 3.40.50.10580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ATPase, V1 complex, subunit F | 0.72 | 55.0 | 5.28e-01 | 84.7% | 73.1% |
| 2hi1A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.69 | 53.0 | 3.36e-01 | 86.4% | 36.6% |
| 2b0cA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.68 | 49.0 | 3.83e-01 | 78.0% | 39.1% |
| 2g6zA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.67 | 57.0 | 4.34e-01 | 100.0% | 47.6% |
| 3kzxA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.66 | 51.0 | 3.95e-01 | 86.4% | 44.9% |
| 5tcdA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.65 | 55.0 | 3.61e-01 | 100.0% | 39.4% |
| 2fwmX00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 54.0 | 3.79e-01 | 100.0% | 30.2% |
| 4gp6A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 53.0 | 3.93e-01 | 100.0% | 60.2% |
| 1c25A00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.62 | 54.0 | 4.00e-01 | 100.0% | 43.5% |
| 3d6iA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 48.0 | 3.96e-01 | 100.0% | 46.4% |
| 1gmxA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.61 | 51.0 | 4.26e-01 | 100.0% | 52.8% |
| 2obnA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 49.0 | 3.51e-01 | 100.0% | 32.7% |
| 4b79B00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 49.0 | 3.44e-01 | 100.0% | 27.5% |
| 5z2lA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 49.0 | 3.40e-01 | 100.0% | 28.0% |
| 4e4yA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 50.0 | 3.41e-01 | 100.0% | 25.6% |
| 1e7wB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 45.0 | 3.06e-01 | 88.1% | 47.3% |
| 3ai2A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 47.0 | 3.19e-01 | 96.6% | 45.2% |
| 2cfcA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 47.0 | 3.28e-01 | 100.0% | 28.4% |
| 6uh2A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 47.0 | 3.31e-01 | 100.0% | 27.0% |
| 6pznB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 47.0 | 3.28e-01 | 100.0% | 29.5% |
| 2a4kB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 47.0 | 3.45e-01 | 100.0% | 34.2% |
| 3qleA00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.57 | 45.0 | 3.31e-01 | 91.5% | 36.3% |
| 3r1iB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 46.0 | 3.10e-01 | 91.5% | 35.2% |
| 2rhcA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 46.0 | 3.20e-01 | 100.0% | 27.2% |
| 3i4fC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 46.0 | 3.22e-01 | 100.0% | 28.7% |
| 2ozvA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 47.0 | 3.38e-01 | 100.0% | 47.5% |
| 6oz7B00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 40.0 | 2.85e-01 | 83.1% | 68.2% |
| 2fi1A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.56 | 46.0 | 3.80e-01 | 100.0% | 65.9% |
| 7ejgC01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 47.0 | 4.09e-01 | 100.0% | 69.4% |
| 3n74A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 45.0 | 3.21e-01 | 100.0% | 29.1% |
| 1o5iA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 46.0 | 3.20e-01 | 100.0% | 25.2% |
| 3e58B01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.55 | 46.0 | 3.61e-01 | 100.0% | 61.2% |
| 2hszA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.55 | 44.0 | 3.53e-01 | 100.0% | 58.7% |
| 3v8bC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 45.0 | 3.09e-01 | 100.0% | 27.1% |
| 4iiuC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 41.0 | 2.86e-01 | 86.4% | 75.0% |
| 7yq0B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 47.0 | 3.47e-01 | 100.0% | 41.6% |
| 3kbbA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.55 | 44.0 | 3.54e-01 | 100.0% | 58.3% |
| 4xrpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 46.0 | 3.58e-01 | 100.0% | 46.8% |
| 1fjhA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 44.0 | 3.04e-01 | 100.0% | 24.6% |
| 1m8pA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 44.0 | 3.23e-01 | 100.0% | 34.8% |
| 2w61A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 45.0 | 2.88e-01 | 100.0% | 63.2% |
| 3vcoA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.53 | 42.0 | 3.10e-01 | 100.0% | 30.6% |
| 5lomA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 45.0 | 3.94e-01 | 100.0% | 69.2% |
| 3fojA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.52 | 41.0 | 3.62e-01 | 96.6% | 59.6% |
| 1bozA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.52 | 42.0 | 3.07e-01 | 100.0% | 30.6% |
| 4gs5A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.51 | 36.0 | 3.11e-01 | 93.2% | 43.8% |
| 3kosA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 41.0 | 3.55e-01 | 93.2% | 59.8% |
| 1ii2B01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.50 | 36.0 | 2.66e-01 | 79.7% | 68.0% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4863981 | 2003.1.1.363 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › AAA_24 | 0.80 | 72.0 | 5.82e-01 | 100.0% | 59.1% |
| 3269018 | 7515.1.1.0 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like | 0.69 | 60.0 | 3.96e-01 | 100.0% | 27.3% |
| 4947304 | 7515.1.1.0 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like | 0.68 | 59.0 | 3.99e-01 | 100.0% | 29.4% |
| 3226345 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.66 | 56.0 | 4.53e-01 | 96.6% | 48.3% |
| 5052866 | 7515.1.1.0 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like | 0.66 | 57.0 | 3.85e-01 | 100.0% | 85.4% |
| 4989709 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.63 | 52.0 | 4.53e-01 | 100.0% | 68.0% |
| 5025533 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.62 | 52.0 | 4.43e-01 | 100.0% | 68.6% |
| 5056194 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.62 | 47.0 | 4.29e-01 | 100.0% | 60.0% |
| 2845663 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.61 | 44.0 | 3.28e-01 | 86.4% | 30.7% |
| 4990771 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.60 | 49.0 | 3.15e-01 | 100.0% | 17.5% |
| 4989175 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.60 | 50.0 | 4.35e-01 | 100.0% | 64.0% |
| 3781860 | 2007.2.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2 | 0.59 | 47.0 | 3.55e-01 | 100.0% | 63.8% |
| 3727493 | 7552.1.1.1 ↗ | a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase | 0.58 | 46.0 | 2.72e-01 | 89.8% | 24.5% |
| 3950501 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.58 | 49.0 | 3.40e-01 | 100.0% | 29.9% |
| 5040112 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.58 | 44.0 | 3.54e-01 | 88.1% | 82.2% |
| 3486837 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.58 | 50.0 | 3.85e-01 | 100.0% | 62.1% |
| 1871340 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.57 | 44.0 | 3.01e-01 | 89.8% | 51.9% |
| 3236152 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 43.0 | 3.59e-01 | 84.7% | 65.5% |
| 1279293 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.56 | 47.0 | 4.04e-01 | 100.0% | 75.7% |
| 1201234 | 2003.1.1.142 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR, adh_short_C2 | 0.56 | 46.0 | 3.18e-01 | 100.0% | 28.1% |
| 4015535 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.55 | 42.0 | 3.04e-01 | 91.5% | 41.9% |
| 3638928 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.54 | 41.0 | 2.84e-01 | 86.4% | 46.1% |
| 3947783 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.54 | 39.0 | 3.49e-01 | 94.9% | 50.5% |
| 1548419 | 2004.1.1.208 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 | 0.54 | 46.0 | 3.36e-01 | 100.0% | 36.6% |
| 3692965 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.54 | 44.0 | 3.13e-01 | 100.0% | 41.4% |
| 4947951 | 2002.1.1.84 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MtrH | 0.53 | 43.0 | 2.91e-01 | 96.6% | 88.7% |
| 3781113 | 2002.1.1.110 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_72 | 0.53 | 46.0 | 2.80e-01 | 100.0% | 55.3% |
| 3904140 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 41.0 | 3.13e-01 | 100.0% | 56.8% |
| 3735825 | 2492.1.1.32 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › OTT_1508_deam | 0.51 | 40.0 | 2.62e-01 | 86.4% | 97.6% |
| 2700287 | 2007.2.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase | 0.50 | 42.0 | 3.63e-01 | 100.0% | 64.1% |