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SRR1747022_scaffold_43_prodigal-single.1__X__X__00178

Bact-Vir

SRR1747022_scaffold_43_prodigal-single.1__X__X__00178

Identity

Kingdom:
phage

Quality

73.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-63
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 50.0 4.24e-01 100.0% 50.5%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 46.0 4.12e-01 100.0% 62.5%
3bvxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 40.0 3.04e-01 76.7% 74.8%
1wq8A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.55 38.0 3.23e-01 71.7% 66.7%
3t5tB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 41.0 2.75e-01 83.3% 65.5%
1lwdA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.55 42.0 2.60e-01 86.7% 42.6%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 44.0 2.92e-01 100.0% 34.9%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 37.0 3.30e-01 75.0% 83.9%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 45.0 3.37e-01 100.0% 59.0%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 39.0 2.48e-01 86.7% 58.2%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 37.0 2.67e-01 78.3% 61.1%
3lltA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 42.0 2.93e-01 100.0% 45.6%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 44.0 3.14e-01 96.7% 75.8%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.19e-01 75.0% 60.0%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 36.0 2.65e-01 76.7% 45.7%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.51 39.0 2.74e-01 91.7% 84.9%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.50 35.0 3.00e-01 75.0% 98.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028745 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.71 52.0 3.16e-01 78.3% 30.4%
5055242 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 48.0 4.41e-01 80.0% 78.8%
4003638 206.1.3.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.59 44.0 3.10e-01 83.3% 86.7%
None — 0.59 44.0 2.99e-01 83.3% 57.6%
4022589 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.56 43.0 3.05e-01 88.3% 88.4%
1141836 213.1.1.12 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › AstA 0.55 40.0 2.78e-01 85.0% 50.0%
3532860 223.1.1.102 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N, PF30670 0.55 46.0 2.91e-01 98.3% 95.9%
3824961 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.54 45.0 3.85e-01 100.0% 87.3%
3328712 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.54 37.0 2.60e-01 75.0% 83.5%
3782147 2008.1.1.79 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Pet127 0.52 42.0 2.70e-01 98.3% 15.6%
5053787 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 45.0 3.04e-01 100.0% 90.2%
4493293 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 37.0 3.13e-01 78.3% 81.8%
3726378 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.51 39.0 3.39e-01 88.3% 82.9%
4227163 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 36.0 3.16e-01 78.3% 85.0%
4124823 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.50 37.0 3.18e-01 81.7% 85.7%
4888824 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.50 40.0 3.36e-01 96.7% 63.2%