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SRR1747022_scaffold_43_prodigal-single.1__X__X__00206
Bact-VirSRR1747022_scaffold_43_prodigal-single.1__X__X__00206
Identity
- Kingdom:
- phage
Quality
89.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-67
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02540.24 best | NAD_synthase | 53.7 | 2.40e-14 | 100.0% | 27.7% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e18A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.96 | 92.0 | 5.89e-01 | 100.0% | 26.2% |
| 1xngA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.96 | 91.0 | 5.89e-01 | 100.0% | 27.1% |
| 1kqpA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.95 | 90.0 | 5.73e-01 | 100.0% | 24.7% |
| 3n05A02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.89 | 82.0 | 5.72e-01 | 98.5% | 40.7% |
| 3ilvA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.88 | 83.0 | 5.13e-01 | 100.0% | 22.6% |
| 3sdbA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.88 | 81.0 | 5.60e-01 | 100.0% | 39.8% |
| 2wsiA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 49.0 | 3.30e-01 | 100.0% | 26.0% |
| 1uwkA02 | 3.40.50.10730 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Urocanase like domains | 0.56 | 39.0 | 2.84e-01 | 74.6% | 73.1% |
| 1xvxA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 44.0 | 3.45e-01 | 92.5% | 62.6% |
| 3cfyA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 39.0 | 3.28e-01 | 82.1% | 78.5% |
| 2oz8A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.53 | 41.0 | 2.93e-01 | 88.1% | 54.3% |
| 4ms4A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 43.0 | 3.24e-01 | 97.0% | 59.2% |
| 4g65A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 37.0 | 3.06e-01 | 77.6% | 88.4% |
| 2xd3A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 41.0 | 3.17e-01 | 95.5% | 94.5% |
| 5h80A01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 40.0 | 3.30e-01 | 89.6% | 60.2% |
| 4q6bA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 41.0 | 3.39e-01 | 95.5% | 63.4% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4060776 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.97 | 93.0 | 5.89e-01 | 100.0% | 24.4% |
| 4644409 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.97 | 93.0 | 5.92e-01 | 100.0% | 25.5% |
| None | — | 0.97 | 93.0 | 5.95e-01 | 100.0% | 26.3% | |
| 4072992 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.97 | 92.0 | 5.85e-01 | 100.0% | 24.4% |
| 5034899 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.97 | 92.0 | 6.16e-01 | 100.0% | 31.2% |
| None | — | 0.97 | 92.0 | 5.91e-01 | 100.0% | 26.3% | |
| 4957756 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.96 | 92.0 | 5.63e-01 | 100.0% | 20.7% |
| 4648784 | 2005.1.1.47 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans | 0.96 | 92.0 | 5.83e-01 | 100.0% | 24.8% |
| 4070508 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.96 | 91.0 | 5.75e-01 | 100.0% | 23.5% |
| 4386055 | 2005.1.1.47 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans | 0.96 | 91.0 | 5.88e-01 | 100.0% | 26.3% |
| 4664976 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.96 | 91.0 | 5.93e-01 | 100.0% | 27.3% |
| 4052372 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.96 | 91.0 | 5.82e-01 | 100.0% | 25.3% |
| 133894 | 2005.1.1.47 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans | 0.96 | 91.0 | 5.96e-01 | 100.0% | 28.2% |
| 4263013 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.96 | 91.0 | 5.79e-01 | 100.0% | 24.8% |
| 5021368 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.96 | 91.0 | 5.60e-01 | 100.0% | 20.9% |
| None | — | 0.96 | 91.0 | 5.83e-01 | 100.0% | 25.8% | |
| 4395650 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.96 | 91.0 | 5.91e-01 | 100.0% | 27.6% |
| 4061833 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.95 | 90.0 | 5.70e-01 | 100.0% | 23.5% |
| 4483631 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.95 | 91.0 | 5.72e-01 | 100.0% | 23.9% |
| 5071227 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.95 | 90.0 | 5.63e-01 | 100.0% | 22.7% |
| 4045263 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.95 | 90.0 | 5.85e-01 | 100.0% | 26.8% |
| 5022630 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.95 | 90.0 | 5.74e-01 | 100.0% | 24.8% |
| None | — | 0.95 | 90.0 | 5.92e-01 | 100.0% | 28.5% | |
| 4675904 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.95 | 90.0 | 5.92e-01 | 100.0% | 28.5% |
| 3964181 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.95 | 90.0 | 5.77e-01 | 100.0% | 25.9% |
| 5060990 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.95 | 90.0 | 5.71e-01 | 100.0% | 24.5% |
| 4253395 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.94 | 89.0 | 5.77e-01 | 100.0% | 26.9% |
| 4262428 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.94 | 88.0 | 5.49e-01 | 100.0% | 21.6% |
| 4432146 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.93 | 88.0 | 5.52e-01 | 100.0% | 27.9% |
| 4038581 | 2005.1.1.47 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans | 0.93 | 88.0 | 5.59e-01 | 100.0% | 26.2% |
| 3898473 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.93 | 79.0 | 5.20e-01 | 89.6% | 30.6% |
| 1260907 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.92 | 83.0 | 5.49e-01 | 95.5% | 30.2% |
| 2663304 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.90 | 81.0 | 5.56e-01 | 95.5% | 31.5% |
| 4029272 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.90 | 84.0 | 5.00e-01 | 100.0% | 21.8% |
| 4947402 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.79 | 72.0 | 4.84e-01 | 100.0% | 35.3% |
| 4615601 | 2003.1.1.31 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CbiJ | 0.53 | 38.0 | 3.18e-01 | 77.6% | 90.4% |
| 3588422 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.53 | 44.0 | 3.42e-01 | 98.5% | 60.6% |
| 3961603 | 2003.1.1.353 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR, ADH_zinc_N_2 | 0.52 | 40.0 | 2.50e-01 | 85.1% | 73.0% |
| 5031052 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 43.0 | 3.17e-01 | 100.0% | 50.2% |
| 3943777 | 7520.1.1.0 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like | 0.51 | 43.0 | 3.49e-01 | 100.0% | 66.9% |
| 3691209 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.51 | 42.0 | 3.19e-01 | 100.0% | 57.9% |
| 1253166 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.50 | 42.0 | 3.47e-01 | 95.5% | 68.0% |
D2
medium
residues 68-124
Domain cluster:
rep: Filtrate_w_scaffold_1_prodigal-single.1__X__X__00045__D185-236