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SRR1747022_scaffold_43_prodigal-single.1__X__X__00258
Bact-VirSRR1747022_scaffold_43_prodigal-single.1__X__X__00258
Identity
- Kingdom:
- phage
Quality
79.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 62-114
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jx8A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.80 | 46.0 | 4.87e-01 | 71.7% | 63.8% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.60 | 47.0 | 3.59e-01 | 94.3% | 35.0% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 44.0 | 3.66e-01 | 84.9% | 94.2% |
| 1pwaA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.58 | 40.0 | 3.08e-01 | 71.7% | 97.6% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.58 | 41.0 | 4.07e-01 | 75.5% | 89.1% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 36.0 | 3.82e-01 | 84.9% | 81.0% |
| 6cz7A01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.54 | 45.0 | 4.29e-01 | 92.5% | 98.4% |
| 2vpzA01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.54 | 45.0 | 4.18e-01 | 92.5% | 79.1% |
| 2db5A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.54 | 39.0 | 3.09e-01 | 83.0% | 44.5% |
| 3jamg01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 39.0 | 2.55e-01 | 92.5% | 28.1% |
| 4r1kB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 35.0 | 2.78e-01 | 77.4% | 47.1% |
| 6p0cA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 35.0 | 2.69e-01 | 75.5% | 86.4% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 169467 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.80 | 46.0 | 4.87e-01 | 71.7% | 63.8% |
| 4024148 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.72 | 43.0 | 4.94e-01 | 77.4% | 88.6% |
| 3665481 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.71 | 40.0 | 4.28e-01 | 71.7% | 64.4% |
| 3239607 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.66 | 37.0 | 4.38e-01 | 71.7% | 82.9% |
| 3208203 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.65 | 46.0 | 4.60e-01 | 86.8% | 72.7% |
| 3593875 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 45.0 | 4.48e-01 | 86.8% | 74.5% |
| 3189994 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.62 | 44.0 | 3.75e-01 | 86.8% | 44.4% |
| 4028035 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.62 | 36.0 | 4.22e-01 | 71.7% | 82.9% |
| 3505640 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.62 | 44.0 | 4.26e-01 | 86.8% | 66.7% |
| 3702861 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.61 | 45.0 | 4.46e-01 | 86.8% | 76.4% |
| 3500033 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 43.0 | 4.41e-01 | 86.8% | 80.0% |
| 5029245 | 375.1.1.9 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom | 0.61 | 45.0 | 3.94e-01 | 86.8% | 51.8% |
| 4028185 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.59 | 43.0 | 4.40e-01 | 86.8% | 86.0% |
| 3484214 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 42.0 | 3.00e-01 | 79.2% | 61.9% |
| 3349740 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 39.0 | 4.17e-01 | 73.6% | 97.8% |
| 3591950 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 42.0 | 3.10e-01 | 84.9% | 31.1% |
| 3715229 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.57 | 39.0 | 3.86e-01 | 86.8% | 69.1% |
| 3605636 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.56 | 38.0 | 3.83e-01 | 86.8% | 69.1% |
| 3337748 | 375.1.1.9 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom | 0.56 | 39.0 | 3.71e-01 | 83.0% | 61.5% |
| 3925197 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.56 | 40.0 | 2.64e-01 | 79.2% | 45.2% |
| 3795823 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.55 | 40.0 | 2.62e-01 | 79.2% | 44.4% |
| 3372678 | 65.1.1.9 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › ALN_composite | 0.55 | 40.0 | 3.74e-01 | 77.4% | 81.5% |
| 5038361 | 4294.1.1.13 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB | 0.55 | 39.0 | 4.17e-01 | 79.2% | 93.3% |
| 4000403 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.54 | 36.0 | 3.68e-01 | 79.2% | 72.0% |
| 4411256 | 2004.1.1.80 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin | 0.53 | 37.0 | 2.54e-01 | 75.5% | 54.7% |
| 4960549 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 42.0 | 4.32e-01 | 90.6% | 94.0% |
| 3900931 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.53 | 37.0 | 3.93e-01 | 73.6% | 95.6% |
| None | — | 0.53 | 39.0 | 2.36e-01 | 83.0% | 12.1% | |
| 3308710 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 36.0 | 3.43e-01 | 81.1% | 55.7% |
| 3597992 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.53 | 36.0 | 3.64e-01 | 84.9% | 67.3% |
| 3265458 | 2004.1.1.81 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GBP | 0.53 | 39.0 | 2.44e-01 | 81.1% | 15.5% |
| 1019 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.52 | 42.0 | 4.23e-01 | 98.1% | 96.2% |
| 4317833 | 2.1.1.264 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › BrxL_N | 0.52 | 41.0 | 3.22e-01 | 94.3% | 53.8% |
| 3707788 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 43.0 | 2.92e-01 | 100.0% | 54.8% |
| 3507112 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.51 | 38.0 | 3.90e-01 | 94.3% | 88.0% |
| 3218889 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 35.0 | 2.74e-01 | 73.6% | 49.6% |
| 3594643 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 40.0 | 2.48e-01 | 92.5% | 26.6% |