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SRR1747022_scaffold_43_prodigal-single.1__X__X__00266
Bact-VirSRR1747022_scaffold_43_prodigal-single.1__X__X__00266
Identity
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-33
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nubA01 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.72 | 57.0 | 4.37e-01 | 93.9% | 76.8% |
| 6jzaA00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.70 | 58.0 | 4.50e-01 | 100.0% | 76.5% |
| 2z2mD01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.69 | 50.0 | 4.25e-01 | 81.8% | 67.8% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.68 | 48.0 | 2.92e-01 | 72.7% | 10.3% |
| 1qmeA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.68 | 50.0 | 3.71e-01 | 84.8% | 41.7% |
| 2arpF02 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.68 | 48.0 | 3.93e-01 | 81.8% | 37.5% |
| 1vwxg01 | 6.20.370.70 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.67 | 47.0 | 4.59e-01 | 75.8% | 91.9% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 45.0 | 3.65e-01 | 84.8% | 37.9% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.63 | 44.0 | 3.91e-01 | 81.8% | 45.5% |
| 5xuhA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.63 | 51.0 | 3.57e-01 | 100.0% | 43.2% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.62 | 44.0 | 3.52e-01 | 75.8% | 55.4% |
| 1n8yC02 | 2.10.220.10 | Mainly Beta › Ribbon › Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A domain 2 › Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A, domain 2 | 0.61 | 44.0 | 3.11e-01 | 78.8% | 29.4% |
| 4qszA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 47.0 | 2.83e-01 | 93.9% | 50.5% |
| 6juvB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 3.72e-01 | 93.9% | 52.0% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.60 | 42.0 | 2.89e-01 | 75.8% | 16.9% |
| 2wdoA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.59 | 47.0 | 3.41e-01 | 100.0% | 44.7% |
| 1b9wA01 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.59 | 44.0 | 4.15e-01 | 100.0% | 84.3% |
| 5xukA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.57 | 39.0 | 3.06e-01 | 97.0% | 50.4% |
| 3go5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 38.0 | 3.11e-01 | 81.8% | 63.3% |
| 4eutB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.55 | 40.0 | 2.59e-01 | 93.9% | 33.8% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 40.0 | 3.32e-01 | 93.9% | 64.9% |
| 2jyeA01 | 2.10.25.160 | Mainly Beta › Ribbon › Laminin › Granulin | 0.54 | 40.0 | 3.50e-01 | 87.9% | 59.0% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 42.0 | 3.34e-01 | 84.8% | 43.8% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.52 | 38.0 | 3.22e-01 | 84.8% | 69.7% |
| 4xsqB00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.52 | 38.0 | 2.50e-01 | 75.8% | 24.0% |
| 2p38A01 | 3.10.450.220 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 40.0 | 3.16e-01 | 90.9% | 56.7% |
| 2a5hA03 | 6.20.120.40 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 34.0 | 3.16e-01 | 93.9% | 46.8% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3480463 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.78 | 61.0 | 6.07e-01 | 87.9% | 82.9% |
| 3503978 | 387.1.7.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold | 0.77 | 53.0 | 5.67e-01 | 72.7% | 96.3% |
| 3243108 | 389.3.1.0 ↗ | few secondary structure elements › EGF-like › LDL receptor-like module › LDL receptor-like module | 0.76 | 56.0 | 4.83e-01 | 81.8% | 69.1% |
| 3884037 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.74 | 60.0 | 4.52e-01 | 93.9% | 75.0% |
| 3897269 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.74 | 60.0 | 4.53e-01 | 93.9% | 74.1% |
| 3223744 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.73 | 58.0 | 4.38e-01 | 93.9% | 78.4% |
| 3510551 | 379.1.1.30 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › FOLN | 0.72 | 58.0 | 4.35e-01 | 93.9% | 78.4% |
| 4496501 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.72 | 51.0 | 2.97e-01 | 84.8% | 8.1% |
| 3524961 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.72 | 61.0 | 4.78e-01 | 100.0% | 81.3% |
| 3852406 | 389.1.1.16 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_3 | 0.71 | 57.0 | 5.31e-01 | 97.0% | 93.3% |
| 3924924 | 387.1.7.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold | 0.71 | 54.0 | 5.42e-01 | 90.9% | 88.6% |
| 3575782 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.68 | 48.0 | 3.91e-01 | 75.8% | 73.8% |
| 3565691 | 387.1.3.4 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like › Prokineticin | 0.67 | 49.0 | 4.44e-01 | 81.8% | 78.0% |
| 3281438 | 2005.1.1.95 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PF28097 | 0.66 | 47.0 | 2.77e-01 | 78.8% | 14.7% |
| 3551871 | 921.1.1.1 ↗ | few secondary structure elements › TSP type-3 repeat › TSP type-3 repeat › TSP type-3 repeat › TSP_3 | 0.66 | 49.0 | 2.96e-01 | 93.9% | 13.7% |
| 3392170 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.65 | 47.0 | 4.61e-01 | 87.9% | 97.5% |
| 3877952 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.65 | 48.0 | 4.62e-01 | 93.9% | 70.0% |
| 3435734 | 389.7.1.0 ↗ | few secondary structure elements › EGF-like › EGF-like domain in S-receptor kinase SRK9 › EGF-like domain in S-receptor kinase SRK9 | 0.65 | 47.0 | 4.56e-01 | 84.8% | 70.0% |
| 3881240 | 3928.1.1.7 ↗ | alpha bundles › Cell division protein CrgA › Cell division protein CrgA › Cell division protein CrgA › Tmemb_55A | 0.64 | 46.0 | 3.77e-01 | 81.8% | 74.3% |
| 3520489 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.64 | 45.0 | 4.58e-01 | 87.9% | 96.7% |
| 3192627 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.63 | 44.0 | 2.76e-01 | 75.8% | 21.0% |
| 3951270 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.63 | 43.0 | 2.73e-01 | 84.8% | 12.3% |
| 5015285 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 43.0 | 2.45e-01 | 75.8% | 6.1% |
| 3490755 | 375.1.1.202 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A | 0.63 | 43.0 | 4.19e-01 | 72.7% | 65.0% |
| 4428289 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.62 | 49.0 | 3.46e-01 | 100.0% | 46.4% |
| 4959355 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 42.0 | 2.58e-01 | 75.8% | 10.2% |
| 3927784 | 4138.1.1.0 ↗ | few secondary structure elements › Granulin repeat › Granulin repeat › Granulin repeat | 0.61 | 43.0 | 3.96e-01 | 78.8% | 56.0% |
| 3519734 | 7523.1.1.20 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Lig_chan-Glu_bd | 0.61 | 46.0 | 2.95e-01 | 81.8% | 77.6% |
| 3610398 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 44.0 | 3.53e-01 | 81.8% | 36.0% |
| 91487 | 389.1.1.15 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_MSP1_1 | 0.60 | 43.0 | 4.19e-01 | 93.9% | 88.9% |
| 3927111 | 2007.2.3.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Myotub-related | 0.59 | 42.0 | 2.40e-01 | 78.8% | 6.2% |
| 3411588 | 4.12.1.1 ↗ | beta barrels › SH3 › Methuselah ectodomain › Methuselah ectodomain › Methuselah_N | 0.59 | 47.0 | 3.39e-01 | 97.0% | 80.9% |
| 3935090 | 7516.1.1.12 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Fringe | 0.59 | 45.0 | 2.64e-01 | 81.8% | 15.9% |
| 3854436 | 4138.1.1.1 ↗ | few secondary structure elements › Granulin repeat › Granulin repeat › Granulin repeat › Granulin | 0.58 | 44.0 | 4.54e-01 | 78.8% | 90.0% |
| 3487950 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.58 | 40.0 | 3.74e-01 | 81.8% | 50.0% |
| 3594415 | 4015.1.1.0 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins | 0.58 | 40.0 | 2.51e-01 | 87.9% | 11.9% |
| 4948433 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.58 | 43.0 | 3.52e-01 | 93.9% | 41.2% |
| 3414352 | 4.12.1.1 ↗ | beta barrels › SH3 › Methuselah ectodomain › Methuselah ectodomain › Methuselah_N | 0.57 | 42.0 | 3.12e-01 | 90.9% | 82.7% |
| 4041343 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.57 | 41.0 | 3.82e-01 | 90.9% | 62.0% |
| 4206629 | 389.1.1.1 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF | 0.56 | 40.0 | 3.93e-01 | 93.9% | 88.9% |
| 3960804 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.55 | 39.0 | 2.89e-01 | 100.0% | 60.7% |
| 4865694 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.54 | 41.0 | 3.35e-01 | 100.0% | 77.1% |
| 3639514 | 2003.1.2.29 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 | 0.54 | 39.0 | 2.22e-01 | 75.8% | 70.2% |
| 5081442 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.53 | 40.0 | 3.43e-01 | 93.9% | 68.6% |
| 5058457 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.53 | 39.0 | 3.41e-01 | 93.9% | 72.3% |
| 4958385 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.53 | 38.0 | 3.65e-01 | 87.9% | 65.0% |
| 3722860 | 2004.1.1.463 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin, Kinesin_assoc, Microtub_bd | 0.53 | 43.0 | 2.41e-01 | 97.0% | 8.0% |
| 3936462 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.52 | 39.0 | 3.84e-01 | 84.8% | 90.0% |
| 3541446 | 921.1.1.0 ↗ | few secondary structure elements › TSP type-3 repeat › TSP type-3 repeat › TSP type-3 repeat | 0.52 | 37.0 | 2.91e-01 | 81.8% | 38.9% |
| 3574531 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.51 | 35.0 | 2.44e-01 | 84.8% | 21.9% |
| 3716727 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.51 | 38.0 | 2.18e-01 | 78.8% | 7.1% |
| 3582854 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.51 | 42.0 | 2.71e-01 | 93.9% | 65.0% |
| 4857570 | 4011.1.1.0 ↗ | beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins | 0.50 | 36.0 | 2.93e-01 | 81.8% | 61.0% |