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SRR1747022_scaffold_43_prodigal-single.1__X__X__00328
Bact-VirSRR1747022_scaffold_43_prodigal-single.1__X__X__00328
Identity
- Kingdom:
- phage
Quality
73.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-61
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2af0A02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.73 | 52.0 | 4.64e-01 | 76.4% | 88.7% |
| 1o0sA02 | 1.20.1370.30 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.70 | 60.0 | 4.84e-01 | 98.2% | 72.2% |
| 5my3A00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.66 | 56.0 | 3.88e-01 | 100.0% | 56.3% |
| 5cwhA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 55.0 | 4.10e-01 | 100.0% | 46.8% |
| 2ii2A04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.64 | 53.0 | 4.77e-01 | 96.4% | 89.9% |
| 2va8A03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.63 | 48.0 | 3.23e-01 | 85.5% | 33.8% |
| 3pmcA00 | 1.10.490.70 | Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain | 0.63 | 52.0 | 4.09e-01 | 100.0% | 68.9% |
| 3pr6A00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.62 | 45.0 | 3.26e-01 | 76.4% | 39.3% |
| 4ragA02 | 1.10.10.430 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily | 0.59 | 44.0 | 4.21e-01 | 83.6% | 88.2% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.59 | 51.0 | 4.63e-01 | 98.2% | 98.7% |
| 1l8nA03 | 3.90.1330.10 | Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain | 0.59 | 47.0 | 3.26e-01 | 92.7% | 42.0% |
| 4o1pD02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.59 | 39.0 | 2.61e-01 | 70.9% | 44.0% |
| 2doaA00 | 1.10.10.2670 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase | 0.58 | 41.0 | 3.46e-01 | 78.2% | 47.1% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 4.09e-01 | 80.0% | 98.2% |
| 3dfgA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 4.15e-01 | 81.8% | 100.0% |
| 4jrrB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 40.0 | 2.82e-01 | 80.0% | 66.3% |
| 4nvsA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 38.0 | 2.92e-01 | 78.2% | 36.1% |
| 1ac1A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 37.0 | 2.68e-01 | 78.2% | 66.0% |
| 5c4iE01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.52 | 40.0 | 2.81e-01 | 89.1% | 81.0% |
| 2h21A02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.50 | 40.0 | 3.04e-01 | 100.0% | 81.2% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4449496 | 3455.1.1.5 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › PexRD54_WY | 0.84 | 74.0 | 6.54e-01 | 100.0% | 85.0% |
| 4471327 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.74 | 54.0 | 5.50e-01 | 80.0% | 100.0% |
| 4066792 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.70 | 49.0 | 5.26e-01 | 74.5% | 100.0% |
| 4997092 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.68 | 56.0 | 5.28e-01 | 100.0% | 77.1% |
| 5025671 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 57.0 | 4.16e-01 | 100.0% | 41.9% |
| 3620474 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.65 | 54.0 | 4.61e-01 | 92.7% | 84.4% |
| 3618492 | 101.1.2.416 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_Egal | 0.65 | 52.0 | 4.63e-01 | 94.5% | 81.2% |
| 5028770 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.64 | 43.0 | 4.64e-01 | 70.9% | 100.0% |
| 5042947 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.63 | 46.0 | 4.73e-01 | 78.2% | 94.0% |
| 3174995 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 51.0 | 4.23e-01 | 98.2% | 85.5% |
| 4419253 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.61 | 41.0 | 4.49e-01 | 74.5% | 100.0% |
| 4115604 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.60 | 51.0 | 3.19e-01 | 96.4% | 41.9% |
| 3823871 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.60 | 49.0 | 4.13e-01 | 94.5% | 74.0% |
| 4640918 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.60 | 44.0 | 4.66e-01 | 81.8% | 100.0% |
| 3560386 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 51.0 | 3.49e-01 | 100.0% | 38.1% |
| 3507907 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.59 | 43.0 | 3.37e-01 | 80.0% | 42.4% |
| 3666817 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.57 | 48.0 | 4.27e-01 | 100.0% | 74.1% |
| None | — | 0.55 | 44.0 | 3.02e-01 | 100.0% | 92.2% |