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SRR1747023_scaffold_5_prodigal-single.1__X__X__00004
Bact-VirSRR1747023_scaffold_5_prodigal-single.1__X__X__00004
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-142
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bh1X00 | 3.30.300.160 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain | 0.70 | 33.0 | 4.52e-01 | 90.1% | 88.2% |
| 3fg6A01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.62 | 38.0 | 4.35e-01 | 90.1% | 81.8% |
| 2v5mA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 33.0 | 3.62e-01 | 100.0% | 67.3% |
| 2cxcA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.58 | 30.0 | 3.99e-01 | 87.8% | 95.7% |
| 1hh2P04 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.57 | 30.0 | 3.92e-01 | 88.5% | 95.6% |
| 1rm6A01 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.57 | 30.0 | 3.10e-01 | 74.8% | 51.3% |
| 3vseB02 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.56 | 37.0 | 4.18e-01 | 82.4% | 87.0% |
| 2xf1A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.56 | 40.0 | 4.17e-01 | 89.3% | 79.5% |
| 2l72A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.56 | 40.0 | 4.23e-01 | 89.3% | 82.2% |
| 4mz2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 35.0 | 3.83e-01 | 94.7% | 76.6% |
| 4nzdB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 29.0 | 3.25e-01 | 91.6% | 70.7% |
| 2rrlA01 | 3.30.750.140 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.51 | 35.0 | 3.74e-01 | 87.0% | 81.7% |
| 2fm7A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.50 | 24.0 | 3.16e-01 | 77.9% | 87.1% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5009414 | 327.5.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 | 0.62 | 34.0 | 4.01e-01 | 89.3% | 76.7% |
| 3962117 | 2008.1.1.215 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4191 | 0.60 | 32.0 | 3.54e-01 | 71.0% | 60.9% |
| 4401040 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.57 | 32.0 | 3.82e-01 | 77.9% | 80.0% |
| 3838476 | 3186.1.1.1 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook | 0.57 | 37.0 | 4.34e-01 | 82.4% | 100.0% |
| 3253750 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.56 | 31.0 | 3.82e-01 | 90.8% | 87.5% |
| 5051382 | 327.11.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 | 0.56 | 29.0 | 3.84e-01 | 88.5% | 98.5% |
| 4340675 | 3186.1.1.1 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook | 0.56 | 38.0 | 4.36e-01 | 84.0% | 100.0% |
| 4991181 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.56 | 29.0 | 3.85e-01 | 87.8% | 98.5% |
| 5015906 | 2484.3.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain | 0.55 | 33.0 | 3.52e-01 | 88.5% | 66.1% |
| 3268419 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.55 | 39.0 | 4.18e-01 | 89.3% | 85.2% |
| 3596245 | 232.1.1.0 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein | 0.54 | 41.0 | 3.19e-01 | 78.6% | 95.8% |
| 5069941 | 327.11.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 | 0.54 | 30.0 | 3.68e-01 | 88.5% | 90.7% |
| 3682165 | 2484.1.1.153 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 | 0.52 | 40.0 | 3.62e-01 | 84.7% | 58.3% |
| 3819272 | 304.48.1.24 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DUF1744 | 0.52 | 40.0 | 3.61e-01 | 85.5% | 58.4% |
| 2439649 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.52 | 43.0 | 3.58e-01 | 90.8% | 65.6% |
| 5041819 | 2484.3.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N | 0.52 | 33.0 | 3.39e-01 | 89.3% | 66.4% |
| 3358835 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.52 | 34.0 | 2.98e-01 | 87.0% | 45.1% |
| 3369280 | 2484.1.1.153 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 | 0.52 | 40.0 | 2.84e-01 | 84.7% | 25.8% |
| 3413173 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.51 | 40.0 | 4.08e-01 | 94.7% | 83.1% |
| 420847 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.51 | 38.0 | 3.97e-01 | 89.3% | 84.2% |
| 4990484 | 231.1.2.6 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › DUF2070 | 0.51 | 38.0 | 2.92e-01 | 77.9% | 82.3% |
| 3596196 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.51 | 30.0 | 3.15e-01 | 74.8% | 60.8% |
| 4024938 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 42.0 | 3.76e-01 | 90.1% | 84.2% |
| 3391353 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.51 | 38.0 | 2.48e-01 | 94.7% | 16.8% |
| 1866769 | 219.1.1.68 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › RickCE_cat | 0.51 | 46.0 | 3.66e-01 | 99.2% | 82.3% |
| 4024389 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.50 | 30.0 | 3.50e-01 | 89.3% | 84.4% |
| 5045640 | 231.1.2.6 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › DUF2070 | 0.50 | 40.0 | 3.10e-01 | 88.5% | 92.1% |