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SRR1747023_scaffold_5_prodigal-single.1__X__X__00005
Bact-VirSRR1747023_scaffold_5_prodigal-single.1__X__X__00005
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-146
Domain cluster:
rep: SRR1747023_scaffold_5_prodigal-single.1__X__X__00004__D12-142
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j72A01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.64 | 44.0 | 4.55e-01 | 100.0% | 75.2% |
| 2z51A02 | 3.30.300.130 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) | 0.62 | 35.0 | 4.32e-01 | 95.7% | 90.3% |
| 4aq1A02 | 2.60.40.1080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 30.0 | 3.39e-01 | 100.0% | 58.2% |
| 1ynfA00 | 3.75.10.20 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › Succinylarginine dihydrolase | 0.59 | 44.0 | 3.01e-01 | 79.3% | 81.6% |
| 4yt9A01 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.57 | 45.0 | 3.38e-01 | 86.2% | 92.1% |
| 2xr1A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.57 | 32.0 | 3.95e-01 | 98.3% | 90.1% |
| 2mcaA00 | 2.60.40.2890 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF5300 | 0.54 | 35.0 | 3.73e-01 | 100.0% | 73.8% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 24.0 | 3.19e-01 | 80.2% | 79.7% |
| 2mcmA00 | 2.60.40.230 | Mainly Beta › Sandwich › Immunoglobulin-like › Neocarzinostatin-like | 0.53 | 35.0 | 3.62e-01 | 100.0% | 70.5% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 24.0 | 2.99e-01 | 75.9% | 70.1% |
| 6upsA01 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.52 | 45.0 | 4.13e-01 | 100.0% | 71.6% |
| 3g9kF01 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.50 | 37.0 | 3.31e-01 | 76.7% | 58.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028065 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 33.0 | 2.92e-01 | 100.0% | 36.0% |
| 3520014 | 2484.3.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain | 0.57 | 35.0 | 3.26e-01 | 82.8% | 49.0% |
| 4989684 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.55 | 35.0 | 4.19e-01 | 74.1% | 100.0% |
| 3602634 | 327.11.1.16 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 | 0.54 | 33.0 | 4.02e-01 | 78.4% | 100.0% |
| 5053911 | 327.11.1.16 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 | 0.53 | 33.0 | 3.90e-01 | 79.3% | 94.7% |
| 4404325 | 7556.1.1.1 ↗ | a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C | 0.52 | 38.0 | 2.90e-01 | 75.0% | 55.3% |
| 4804719 | 219.1.1.68 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › RickCE_cat | 0.51 | 39.0 | 3.66e-01 | 99.1% | 65.5% |
| 4943776 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.51 | 46.0 | 3.33e-01 | 100.0% | 84.5% |