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SRR1747023_scaffold_5_prodigal-single.1__X__X__00065
Bact-VirSRR1747023_scaffold_5_prodigal-single.1__X__X__00065
Identity
- Kingdom:
- phage
Quality
61.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-76
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.72 | 65.0 | 5.34e-01 | 100.0% | 89.1% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 55.0 | 4.96e-01 | 81.9% | 84.5% |
| 4iggB02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.71 | 63.0 | 5.29e-01 | 100.0% | 93.4% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.70 | 52.0 | 4.61e-01 | 80.6% | 84.9% |
| 2yk0A03 | 1.20.58.1930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 51.0 | 3.59e-01 | 79.2% | 59.0% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.69 | 53.0 | 4.64e-01 | 80.6% | 84.3% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.68 | 52.0 | 4.56e-01 | 81.9% | 86.0% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 50.0 | 4.38e-01 | 83.3% | 77.8% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 48.0 | 4.59e-01 | 81.9% | 92.9% |
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.62 | 55.0 | 4.54e-01 | 100.0% | 55.7% |
| 2l9bA00 | 1.25.40.630 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 42.0 | 3.95e-01 | 70.8% | 60.4% |
| 3wirA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.61 | 46.0 | 2.94e-01 | 81.9% | 44.0% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 40.0 | 4.35e-01 | 100.0% | 84.7% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 52.0 | 4.74e-01 | 100.0% | 74.7% |
| 4cs9B02 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.60 | 41.0 | 3.59e-01 | 84.7% | 47.7% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.59 | 47.0 | 5.12e-01 | 100.0% | 100.0% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.59 | 44.0 | 3.66e-01 | 83.3% | 89.4% |
| 2ibdA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 49.0 | 4.01e-01 | 98.6% | 76.2% |
| 3lwjA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 49.0 | 3.73e-01 | 100.0% | 54.9% |
| 4yonA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.58 | 42.0 | 3.08e-01 | 79.2% | 50.9% |
| 1qdbA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 49.0 | 3.87e-01 | 93.1% | 72.7% |
| 5hayA02 | 1.25.40.440 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain | 0.57 | 39.0 | 3.82e-01 | 72.2% | 65.8% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.56 | 43.0 | 4.23e-01 | 83.3% | 83.3% |
| 2yhcA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 50.0 | 3.60e-01 | 100.0% | 38.8% |
| 3as5A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 42.0 | 3.21e-01 | 83.3% | 42.1% |
| 1kfdA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.54 | 37.0 | 3.81e-01 | 100.0% | 74.6% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 44.0 | 3.77e-01 | 91.7% | 71.2% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 4.12e-01 | 93.1% | 86.4% |
| 3mvuA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.53 | 42.0 | 3.07e-01 | 91.7% | 32.6% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.52 | 38.0 | 4.22e-01 | 100.0% | 98.3% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 39.0 | 3.81e-01 | 100.0% | 74.1% |
| 2itbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 42.0 | 3.11e-01 | 94.4% | 37.4% |
| 4cemA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 43.0 | 2.90e-01 | 98.6% | 51.1% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3163647 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.76 | 52.0 | 4.18e-01 | 79.2% | 37.1% |
| 3279544 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.74 | 41.0 | 2.66e-01 | 100.0% | 13.2% |
| 3700264 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.69 | 61.0 | 5.05e-01 | 100.0% | 84.6% |
| 3975940 | 601.4.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TorS_sensor_domain | 0.68 | 52.0 | 4.08e-01 | 81.9% | 81.3% |
| 4077176 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.67 | 50.0 | 4.60e-01 | 100.0% | 62.2% |
| 3487984 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.66 | 45.0 | 4.10e-01 | 70.8% | 84.0% |
| 4994061 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.66 | 57.0 | 4.66e-01 | 100.0% | 88.8% |
| 3610620 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.65 | 50.0 | 4.25e-01 | 81.9% | 79.1% |
| 3557223 | 150.3.1.22 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › PRF | 0.64 | 58.0 | 4.28e-01 | 100.0% | 98.3% |
| 3699630 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.61 | 45.0 | 3.82e-01 | 81.9% | 59.2% |
| 3518551 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 48.0 | 3.16e-01 | 87.5% | 38.7% |
| 3273910 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.59 | 42.0 | 3.65e-01 | 100.0% | 47.8% |
| 3598728 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.59 | 44.0 | 3.70e-01 | 81.9% | 59.2% |
| 3895966 | 2002.1.1.150 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NAGidase | 0.58 | 46.0 | 2.83e-01 | 93.1% | 27.6% |
| 3397602 | 3890.1.1.0 ↗ | alpha bundles › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins | 0.56 | 49.0 | 3.51e-01 | 100.0% | 44.9% |
| 4467968 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.55 | 46.0 | 4.05e-01 | 100.0% | 96.7% |
| 3796213 | 3567.1.1.83 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › SOAR | 0.54 | 50.0 | 4.54e-01 | 100.0% | 83.2% |
| 3478267 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.54 | 45.0 | 4.53e-01 | 93.1% | 89.3% |
| 3312027 | 603.1.1.156 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PGG | 0.54 | 46.0 | 3.77e-01 | 93.1% | 55.4% |
| 4345163 | 633.10.1.28 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › PF27080 | 0.53 | 36.0 | 3.18e-01 | 72.2% | 70.4% |
| 5043090 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.53 | 36.0 | 3.55e-01 | 72.2% | 96.2% |
| 3676147 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.53 | 45.0 | 4.42e-01 | 100.0% | 98.8% |
| 5063236 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.52 | 42.0 | 3.25e-01 | 87.5% | 60.6% |
| 5075077 | 3962.1.1.0 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit | 0.51 | 37.0 | 2.83e-01 | 77.8% | 90.9% |
D2
high
residues 81-152