←Back to structures
SRR1747023_scaffold_5_prodigal-single.1__X__X__00095
Bact-VirSRR1747023_scaffold_5_prodigal-single.1__X__X__00095
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-72
Domain cluster:
rep: NC_048654.1__YP_009832427.1__HWB09_gp094__00098__D11-80
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 40.0 | 4.29e-01 | 100.0% | 54.5% |
| 3mzkB01 | 6.20.50.30 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.69 | 36.0 | 4.37e-01 | 98.4% | 81.6% |
| 1zxtA01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.67 | 40.0 | 4.04e-01 | 100.0% | 59.0% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.67 | 47.0 | 4.64e-01 | 74.2% | 100.0% |
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.67 | 37.0 | 4.45e-01 | 100.0% | 87.2% |
| 1f9qD00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 40.0 | 3.99e-01 | 100.0% | 57.6% |
| 2lojA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.65 | 30.0 | 3.68e-01 | 88.7% | 66.7% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 42.0 | 4.01e-01 | 100.0% | 58.1% |
| 2z1aA02 | 3.90.780.10 | Alpha Beta › Alpha-Beta Complex › 5'-nucleotidase; domain 2 › 5'-Nucleotidase, C-terminal domain | 0.62 | 43.0 | 3.02e-01 | 72.6% | 52.5% |
| 1mpyA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 41.0 | 3.14e-01 | 77.4% | 91.9% |
| 2ww8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 32.0 | 2.69e-01 | 88.7% | 33.0% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.56 | 39.0 | 3.27e-01 | 72.6% | 47.4% |
| 2x8fA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 40.0 | 2.58e-01 | 79.0% | 99.7% |
| 3a7rA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 44.0 | 3.12e-01 | 100.0% | 79.4% |
| 5kiqA02 | 3.10.20.890 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 33.0 | 3.17e-01 | 72.6% | 51.4% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.54 | 45.0 | 3.91e-01 | 91.9% | 84.9% |
| 1bbuA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 43.0 | 3.38e-01 | 91.9% | 57.1% |
| 3pfsB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 45.0 | 3.61e-01 | 100.0% | 56.9% |
| 3k5iA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 42.0 | 3.00e-01 | 91.9% | 41.4% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 41.0 | 3.19e-01 | 90.3% | 92.6% |
| 2k5wA00 | 2.40.50.480 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 | 0.52 | 44.0 | 3.72e-01 | 100.0% | 80.2% |
| 2exdA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 41.0 | 3.95e-01 | 100.0% | 75.7% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.52 | 36.0 | 3.14e-01 | 75.8% | 81.6% |
| 1oe8A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 44.0 | 4.11e-01 | 100.0% | 90.0% |
| 4lrzE02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 36.0 | 3.25e-01 | 77.4% | 97.9% |
| 8bs9A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 35.0 | 2.34e-01 | 74.2% | 25.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4545641 | 2008.1.1.78 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc | 0.60 | 43.0 | 3.21e-01 | 77.4% | 62.4% |
| 4937917 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 45.0 | 4.87e-01 | 88.7% | 98.0% |
| 3276253 | 388.1.1.0 ↗ | few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like | 0.60 | 38.0 | 4.32e-01 | 87.1% | 91.1% |
| 4168203 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.59 | 40.0 | 3.75e-01 | 71.0% | 92.5% |
| 4019819 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.59 | 43.0 | 2.88e-01 | 79.0% | 68.2% |
| 2502895 | 2.27.1.0 ↗ | beta barrels › OB-fold | 0.57 | 50.0 | 4.69e-01 | 100.0% | 83.1% |
| None | — | 0.57 | 42.0 | 2.97e-01 | 95.2% | 25.8% | |
| None | — | 0.57 | 35.0 | 2.09e-01 | 100.0% | 8.7% | |
| 4952854 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.56 | 38.0 | 3.84e-01 | 72.6% | 92.3% |
| 4027651 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.56 | 44.0 | 3.65e-01 | 88.7% | 60.0% |
| 5009291 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 44.0 | 3.86e-01 | 88.7% | 100.0% |
| 5039450 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.55 | 39.0 | 3.69e-01 | 74.2% | 90.7% |
| 2723972 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.55 | 39.0 | 3.58e-01 | 74.2% | 86.4% |
| 3563220 | 4.1.1.220 ↗ | beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor | 0.55 | 39.0 | 3.68e-01 | 79.0% | 87.5% |
| 5007497 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.53 | 40.0 | 2.67e-01 | 85.5% | 80.0% |
| 5041223 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.53 | 43.0 | 2.88e-01 | 100.0% | 96.4% |
| 3953557 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.53 | 41.0 | 2.81e-01 | 90.3% | 41.9% |
| 3816337 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.52 | 36.0 | 3.78e-01 | 72.6% | 98.1% |
| 3272410 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.52 | 42.0 | 3.57e-01 | 93.5% | 80.0% |
| 3459743 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.52 | 33.0 | 3.58e-01 | 95.2% | 80.0% |
| 3602243 | 331.1.1.25 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF1894 | 0.52 | 38.0 | 3.57e-01 | 85.5% | 77.6% |
| 5068179 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.51 | 44.0 | 3.94e-01 | 100.0% | 87.8% |
| 3277756 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.51 | 35.0 | 2.81e-01 | 74.2% | 88.1% |
| 4125200 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.51 | 33.0 | 3.06e-01 | 91.9% | 48.2% |
| 3810129 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.51 | 38.0 | 3.79e-01 | 100.0% | 80.0% |
| 3830422 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.50 | 38.0 | 3.02e-01 | 100.0% | 36.6% |