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SRR1747023_scaffold_5_prodigal-single.1__X__X__00134
Bact-VirSRR1747023_scaffold_5_prodigal-single.1__X__X__00134
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-61
Domain cluster:
rep: IMGVR_UViG_3300028602_000223-3300028602-Ga0265294_1000762521__D6-47
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 48.0 | 4.31e-01 | 100.0% | 53.8% |
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 55.0 | 5.08e-01 | 100.0% | 78.1% |
| 2d8iA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.62 | 49.0 | 4.21e-01 | 88.7% | 84.1% |
| 3d4eA01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.60 | 45.0 | 3.94e-01 | 83.0% | 69.0% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 47.0 | 4.66e-01 | 100.0% | 87.3% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.59 | 49.0 | 4.92e-01 | 100.0% | 100.0% |
| 2lg1A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 47.0 | 3.84e-01 | 98.1% | 83.5% |
| 1eqnB01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.58 | 42.0 | 3.39e-01 | 84.9% | 58.7% |
| 7szeB01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.57 | 40.0 | 3.27e-01 | 73.6% | 41.1% |
| 6c6sD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 43.0 | 4.22e-01 | 100.0% | 78.3% |
| 2d9uA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 41.0 | 3.77e-01 | 83.0% | 58.1% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 45.0 | 3.63e-01 | 96.2% | 81.5% |
| 1r8oB01 | 2.30.30.480 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 42.0 | 3.93e-01 | 81.1% | 84.8% |
| 1dv2A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 38.0 | 2.47e-01 | 73.6% | 26.6% |
| 2cmgA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.55 | 42.0 | 4.26e-01 | 88.7% | 92.2% |
| 1e6vC00 | 3.90.320.20 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit | 0.55 | 40.0 | 2.69e-01 | 84.9% | 71.8% |
| 6guuA01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 38.0 | 3.85e-01 | 83.0% | 88.9% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 42.0 | 3.45e-01 | 100.0% | 59.5% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.53 | 40.0 | 3.07e-01 | 86.8% | 58.4% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 43.0 | 4.06e-01 | 100.0% | 77.1% |
| 5yrzB00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.52 | 36.0 | 3.55e-01 | 94.3% | 67.2% |
| 2vhfB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 41.0 | 2.63e-01 | 98.1% | 91.3% |
| 7kx7A03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 40.0 | 2.81e-01 | 94.3% | 51.2% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3407820 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.71 | 51.0 | 4.51e-01 | 100.0% | 50.6% |
| 3585538 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.63 | 51.0 | 4.36e-01 | 100.0% | 55.0% |
| 3793962 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.63 | 51.0 | 4.45e-01 | 100.0% | 61.1% |
| 3351118 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 51.0 | 3.62e-01 | 100.0% | 29.1% |
| 4995755 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 42.0 | 4.44e-01 | 88.7% | 84.4% |
| 3398310 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.62 | 51.0 | 4.06e-01 | 96.2% | 86.1% |
| 5034832 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 50.0 | 4.69e-01 | 100.0% | 85.7% |
| 3394821 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.61 | 47.0 | 4.82e-01 | 84.9% | 94.0% |
| 4221708 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.61 | 50.0 | 4.64e-01 | 100.0% | 72.9% |
| 3495447 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.60 | 48.0 | 3.90e-01 | 100.0% | 45.0% |
| 3929231 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 48.0 | 3.78e-01 | 98.1% | 73.8% |
| 3601563 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 47.0 | 3.63e-01 | 96.2% | 83.3% |
| 3926852 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 48.0 | 3.66e-01 | 96.2% | 82.1% |
| 3935716 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.58 | 46.0 | 4.33e-01 | 100.0% | 76.0% |
| 3205349 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.58 | 43.0 | 2.58e-01 | 84.9% | 87.5% |
| 3349740 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 43.0 | 4.61e-01 | 88.7% | 95.6% |
| 5036498 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.57 | 44.0 | 4.09e-01 | 100.0% | 65.3% |
| 3427966 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.56 | 40.0 | 3.93e-01 | 83.0% | 86.7% |
| 3654401 | 206.1.3.45 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Biotin_carb_C+CPSase_L_D2 | 0.55 | 43.0 | 2.67e-01 | 92.5% | 69.6% |
| 3996280 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.55 | 45.0 | 3.75e-01 | 100.0% | 48.2% |
| 3690675 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.54 | 44.0 | 2.63e-01 | 96.2% | 49.2% |
| 4974065 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.54 | 43.0 | 4.19e-01 | 98.1% | 86.7% |
| 3836896 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.54 | 35.0 | 2.22e-01 | 71.7% | 10.5% |
| 4020463 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.53 | 41.0 | 2.67e-01 | 86.8% | 65.4% |
| 3579362 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.53 | 43.0 | 3.46e-01 | 98.1% | 44.5% |
| 4319822 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.53 | 43.0 | 2.85e-01 | 94.3% | 47.4% |
| 3649929 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.53 | 40.0 | 3.48e-01 | 84.9% | 81.2% |
| 3881114 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.52 | 42.0 | 2.82e-01 | 94.3% | 46.3% |
| 3234550 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.52 | 41.0 | 2.71e-01 | 94.3% | 43.6% |
| 3235744 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.51 | 41.0 | 2.70e-01 | 94.3% | 42.6% |
| 4172288 | 1.1.7.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae | 0.51 | 41.0 | 3.46e-01 | 88.7% | 77.8% |
| 3992596 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 43.0 | 3.00e-01 | 100.0% | 31.0% |
| 3797569 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 41.0 | 4.13e-01 | 96.2% | 90.9% |
| 3630701 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.51 | 40.0 | 2.60e-01 | 94.3% | 39.3% |
D2
high
residues 64-145
Domain cluster:
rep: STL6-S73_scaffold_1_prodigal-single.1__X__X__00146__D12-97