←Back to structures
SRR1747023_scaffold_5_prodigal-single.1__X__X__00155
Bact-VirSRR1747023_scaffold_5_prodigal-single.1__X__X__00155
Identity
- Kingdom:
- phage
Quality
59.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-121
Domain cluster:
rep: OK896991.1__UDY80742.1__X__00073__D5-103
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02452.24 best | PemK_toxin | 38.2 | 2.00e-09 | 89.7% | 78.9% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ub4A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.86 | 72.0 | 7.35e-01 | 100.0% | 90.3% |
| 5uctB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.84 | 71.0 | 7.31e-01 | 100.0% | 94.0% |
| 3jscA00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 67.0 | 7.08e-01 | 100.0% | 93.8% |
| 1m1fB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 73.0 | 7.39e-01 | 100.0% | 95.2% |
| 5hk0B00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 72.0 | 7.25e-01 | 100.0% | 92.5% |
| 1ne8A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 77.0 | 7.45e-01 | 100.0% | 91.4% |
| 4rmoA00 | 3.10.129.130 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › | 0.75 | 69.0 | 6.07e-01 | 100.0% | 83.1% |
| 1tg0A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 39.0 | 4.91e-01 | 82.2% | 92.4% |
| 5f3yA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 41.0 | 4.82e-01 | 86.0% | 87.0% |
| 4glkA00 | 3.10.129.130 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › | 0.67 | 60.0 | 5.20e-01 | 100.0% | 80.6% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 36.0 | 4.19e-01 | 90.7% | 76.6% |
| 5zr6A02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.62 | 39.0 | 4.48e-01 | 82.2% | 88.2% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.62 | 39.0 | 4.50e-01 | 90.7% | 88.3% |
| 3e19B01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.61 | 37.0 | 4.52e-01 | 83.2% | 100.0% |
| 5m99A02 | 3.90.400.10 | Alpha Beta › Alpha-Beta Complex › Oligo-1,6-glucosidase; domain 2 › Oligo-1,6-glucosidase; Domain 2 | 0.57 | 29.0 | 3.56e-01 | 96.3% | 78.5% |
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.57 | 48.0 | 4.31e-01 | 90.7% | 80.8% |
| 1avwB00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 42.0 | 3.65e-01 | 83.2% | 91.8% |
| 2js3A01 | 1.10.287.780 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ITPase-like domains | 0.54 | 25.0 | 2.94e-01 | 92.5% | 59.2% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.54 | 48.0 | 4.25e-01 | 96.3% | 81.5% |
| 1w1wA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 35.0 | 2.67e-01 | 71.0% | 73.7% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2125775 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.86 | 71.0 | 7.22e-01 | 100.0% | 87.5% |
| 3955085 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.86 | 74.0 | 7.67e-01 | 100.0% | 96.0% |
| 3290144 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 61.0 | 7.03e-01 | 76.6% | 97.5% |
| 3290347 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 71.0 | 7.43e-01 | 100.0% | 93.9% |
| 3951374 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.85 | 74.0 | 7.48e-01 | 100.0% | 92.4% |
| 3955562 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.85 | 75.0 | 7.58e-01 | 100.0% | 94.3% |
| 4645229 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.85 | 76.0 | 7.63e-01 | 100.0% | 92.7% |
| 2046239 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.84 | 71.0 | 7.31e-01 | 100.0% | 94.0% |
| 3587639 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.84 | 75.0 | 7.48e-01 | 100.0% | 93.5% |
| 4928262 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.83 | 78.0 | 7.74e-01 | 100.0% | 95.5% |
| 2702587 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.83 | 74.0 | 7.32e-01 | 100.0% | 90.2% |
| 2832038 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.83 | 74.0 | 7.25e-01 | 100.0% | 88.7% |
| 4667326 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.82 | 77.0 | 7.55e-01 | 100.0% | 92.2% |
| 3955877 | 4.1.1.432 ↗ | beta barrels › SH3 › SH3 › SH3 › PF27466 | 0.82 | 69.0 | 7.13e-01 | 100.0% | 94.0% |
| 5065801 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.82 | 71.0 | 7.24e-01 | 100.0% | 93.3% |
| 2507392 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.82 | 71.0 | 7.00e-01 | 100.0% | 86.6% |
| 5062749 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.82 | 76.0 | 7.49e-01 | 100.0% | 92.1% |
| 4938225 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.82 | 73.0 | 7.39e-01 | 100.0% | 95.2% |
| 3503901 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.82 | 76.0 | 7.30e-01 | 100.0% | 89.0% |
| 4950222 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.82 | 74.0 | 7.32e-01 | 100.0% | 92.7% |
| 4267554 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.81 | 75.0 | 7.42e-01 | 100.0% | 92.9% |
| 3589640 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.81 | 73.0 | 7.31e-01 | 100.0% | 92.7% |
| 1109151 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.81 | 76.0 | 7.28e-01 | 100.0% | 88.3% |
| 5027789 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.81 | 67.0 | 6.99e-01 | 100.0% | 94.0% |
| 3981828 | 4.1.1.23 ↗ | beta barrels › SH3 › SH3 › SH3 › CcdB | 0.81 | 70.0 | 7.18e-01 | 100.0% | 94.2% |
| 1952922 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.81 | 72.0 | 7.20e-01 | 100.0% | 92.7% |
| 2643543 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.81 | 76.0 | 7.24e-01 | 100.0% | 90.2% |
| 3964273 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.80 | 75.0 | 7.34e-01 | 100.0% | 92.2% |
| 4961922 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 72.0 | 7.17e-01 | 100.0% | 92.7% |
| 5045554 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.80 | 75.0 | 7.23e-01 | 100.0% | 89.9% |
| 5013823 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.78 | 74.0 | 6.84e-01 | 100.0% | 96.2% |
| 4034169 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.77 | 72.0 | 6.44e-01 | 100.0% | 73.6% |
| 4950603 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.76 | 69.0 | 6.76e-01 | 100.0% | 89.6% |
| 3959465 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.76 | 67.0 | 6.27e-01 | 100.0% | 77.7% |
| 1688342 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 69.0 | 6.06e-01 | 100.0% | 82.6% |
| 4969376 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.75 | 69.0 | 6.65e-01 | 98.1% | 91.5% |
| 5012680 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.75 | 68.0 | 6.76e-01 | 100.0% | 94.5% |
| 3694663 | 4.1.1.179 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6590 | 0.74 | 68.0 | 5.80e-01 | 100.0% | 94.1% |
| 3728463 | 4.1.1.179 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6590 | 0.73 | 68.0 | 5.70e-01 | 100.0% | 91.4% |
| 3691426 | 4.1.1.179 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6590 | 0.72 | 67.0 | 5.59e-01 | 100.0% | 92.0% |
| 3636066 | 4.1.1.179 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6590 | 0.72 | 67.0 | 5.77e-01 | 100.0% | 89.4% |
| 3211367 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.70 | 39.0 | 4.30e-01 | 84.1% | 66.7% |
| 4016602 | 4.1.1.179 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6590 | 0.69 | 64.0 | 5.75e-01 | 100.0% | 90.9% |
| 157818 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.68 | 40.0 | 4.35e-01 | 86.0% | 69.2% |
| 3600929 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 37.0 | 4.14e-01 | 82.2% | 75.3% |
| 1290375 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.61 | 38.0 | 4.67e-01 | 82.2% | 98.5% |
| 3612182 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 42.0 | 4.55e-01 | 81.3% | 94.4% |
| 3715776 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 33.0 | 4.02e-01 | 100.0% | 100.0% |
| 3298755 | 2484.1.1.15 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 | 0.51 | 35.0 | 2.67e-01 | 71.0% | 94.6% |
D2
high
residues 133-189
D3
high
residues 253-297