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SRR1747023_scaffold_5_prodigal-single.1__X__X__00179
Bact-VirSRR1747023_scaffold_5_prodigal-single.1__X__X__00179
Identity
- Kingdom:
- phage
Quality
91.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-95
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.72 | 38.0 | 4.63e-01 | 100.0% | 80.0% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.69 | 51.0 | 4.50e-01 | 100.0% | 52.9% |
| 3p54A02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.64 | 37.0 | 4.11e-01 | 100.0% | 73.2% |
| 2hzmA02 | 2.20.140.20 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › | 0.61 | 48.0 | 5.09e-01 | 100.0% | 92.9% |
| 6i7sG01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.61 | 54.0 | 3.98e-01 | 100.0% | 87.9% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.61 | 41.0 | 4.21e-01 | 90.4% | 71.7% |
| 1mkfA02 | 2.60.40.1340 | Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like | 0.60 | 46.0 | 3.78e-01 | 100.0% | 44.8% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.60 | 54.0 | 3.89e-01 | 100.0% | 89.0% |
| 2lfuA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.59 | 53.0 | 4.80e-01 | 100.0% | 82.9% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 53.0 | 4.56e-01 | 100.0% | 89.3% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 51.0 | 4.30e-01 | 98.9% | 71.7% |
| 2bzyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 25.0 | 3.00e-01 | 95.7% | 58.1% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 42.0 | 3.93e-01 | 79.8% | 86.2% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 38.0 | 4.20e-01 | 87.2% | 94.4% |
| 1egjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 4.00e-01 | 79.8% | 94.1% |
| 3qkgA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 49.0 | 4.05e-01 | 100.0% | 67.7% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.54 | 41.0 | 3.42e-01 | 80.9% | 52.5% |
| 4i3gA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.59e-01 | 75.5% | 94.7% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 41.0 | 3.41e-01 | 100.0% | 46.2% |
| 1z87A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 42.0 | 4.18e-01 | 100.0% | 83.0% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 31.0 | 3.58e-01 | 83.0% | 88.5% |
| 4kcaA03 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 45.0 | 4.51e-01 | 98.9% | 94.8% |
| 1lkeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 46.0 | 3.92e-01 | 100.0% | 66.2% |
| 4p78C00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.52 | 33.0 | 3.66e-01 | 96.8% | 89.4% |
| 2x8fA02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 44.0 | 4.40e-01 | 98.9% | 94.7% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.51 | 37.0 | 3.71e-01 | 100.0% | 76.8% |
| 1v5mA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 46.0 | 4.03e-01 | 100.0% | 71.3% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 38.0 | 3.77e-01 | 100.0% | 76.8% |
| 4epsA02 | 2.60.40.3570 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.83e-01 | 91.5% | 94.4% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3536447 | 4026.1.1.1 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer | 0.71 | 54.0 | 4.62e-01 | 100.0% | 51.7% |
| 3256023 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.70 | 56.0 | 4.94e-01 | 100.0% | 59.3% |
| 3496143 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.70 | 53.0 | 4.61e-01 | 100.0% | 52.4% |
| 4564828 | 4026.1.1.1 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer | 0.68 | 51.0 | 4.34e-01 | 100.0% | 49.0% |
| 3647716 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.64 | 58.0 | 4.84e-01 | 100.0% | 91.9% |
| 3931076 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.63 | 45.0 | 4.22e-01 | 89.4% | 59.2% |
| 4147907 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.63 | 56.0 | 4.93e-01 | 100.0% | 90.7% |
| 4086880 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.63 | 56.0 | 4.83e-01 | 100.0% | 92.6% |
| 3783065 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.62 | 35.0 | 2.36e-01 | 100.0% | 13.9% |
| 3994973 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.61 | 54.0 | 4.81e-01 | 96.8% | 86.9% |
| 3427908 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 44.0 | 4.43e-01 | 78.7% | 78.9% |
| 3214289 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 38.0 | 3.62e-01 | 97.9% | 55.7% |
| 3514135 | 5084.1.1.19 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › BCSC_C | 0.57 | 52.0 | 4.28e-01 | 100.0% | 84.2% |
| 3213645 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.56 | 43.0 | 3.17e-01 | 81.9% | 64.4% |
| 3653274 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.56 | 40.0 | 4.12e-01 | 90.4% | 82.4% |
| 3432801 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.56 | 48.0 | 3.92e-01 | 97.9% | 71.4% |
| 3654114 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.56 | 41.0 | 3.20e-01 | 77.7% | 66.7% |
| 4203446 | 1.1.5.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 | 0.55 | 42.0 | 2.69e-01 | 81.9% | 72.9% |
| 4674170 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.54 | 37.0 | 3.46e-01 | 100.0% | 56.7% |
| 3403847 | 9.1.1.47 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Chitin_bind_4 | 0.53 | 37.0 | 3.78e-01 | 77.7% | 74.4% |
| 4011818 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 39.0 | 2.73e-01 | 77.7% | 31.8% |
| 4341158 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 42.0 | 3.59e-01 | 90.4% | 69.3% |
| 3177162 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 38.0 | 3.62e-01 | 79.8% | 96.4% |
| 3913945 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.50 | 43.0 | 3.98e-01 | 100.0% | 81.2% |
| 3936663 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.50 | 37.0 | 3.37e-01 | 76.6% | 96.8% |
| 1823374 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.50 | 37.0 | 2.68e-01 | 80.9% | 52.9% |
| 3707760 | 2.1.1.225 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 | 0.50 | 36.0 | 3.37e-01 | 76.6% | 89.2% |