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SRR1747023_scaffold_5_prodigal-single.1__X__X__00204
Bact-VirSRR1747023_scaffold_5_prodigal-single.1__X__X__00204
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-69
Domain cluster:
rep: IMGVR_UViG_3300027742_000060-3300027742-Ga0209121_100055695__D13-59
D2
high
residues 320-381_398-470
D3
high
residues 479-623
D4
medium
residues 70-89_169-263
Domain cluster:
rep: IMGVR_UViG_3300023173_001715-3300023173-Ga0255776_100288841__D171-266
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x9zA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 47.0 | 4.28e-01 | 82.6% | 57.0% |
| 2cw5A02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.65 | 45.0 | 4.99e-01 | 78.3% | 92.1% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 49.0 | 4.46e-01 | 82.6% | 66.7% |
| 2woyA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 49.0 | 4.22e-01 | 82.6% | 65.7% |
| 2d9rA00 | 2.40.30.100 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like | 0.62 | 43.0 | 4.87e-01 | 79.1% | 97.6% |
| 2q6iA02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.61 | 46.0 | 4.80e-01 | 79.1% | 89.3% |
| 8begA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 48.0 | 4.28e-01 | 82.6% | 64.4% |
| 2zbvC02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.61 | 45.0 | 4.70e-01 | 77.4% | 92.2% |
| 4ofqA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 47.0 | 4.26e-01 | 82.6% | 64.5% |
| 1n67A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 41.0 | 3.88e-01 | 82.6% | 60.3% |
| 8begA03 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 44.0 | 4.11e-01 | 82.6% | 65.1% |
| 2ln7A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.56 | 38.0 | 3.50e-01 | 82.6% | 54.4% |
| 1ao7B00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 3.98e-01 | 80.9% | 82.0% |
| 2ijzA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.54 | 40.0 | 4.13e-01 | 78.3% | 97.2% |
| 1bw3A00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.53 | 40.0 | 3.89e-01 | 79.1% | 96.0% |
| 4avrA00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.51 | 39.0 | 4.20e-01 | 79.1% | 98.9% |
| 4g0bA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 42.0 | 3.52e-01 | 89.6% | 84.4% |
| 2pffB05 | 3.30.70.2430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 27.0 | 3.43e-01 | 73.9% | 93.4% |
| 2qmaA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 37.0 | 3.59e-01 | 75.7% | 72.8% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3945562 | 1.1.7.111 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › T6SS_TssF | 0.73 | 57.0 | 5.76e-01 | 82.6% | 95.7% |
| 5021187 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.71 | 38.0 | 4.75e-01 | 78.3% | 85.7% |
| 3011458 | 12.1.1.25 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Fucosidase_C | 0.69 | 43.0 | 4.69e-01 | 80.0% | 75.8% |
| 3011454 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.68 | 43.0 | 4.63e-01 | 80.0% | 76.6% |
| 4950006 | 11.1.1.33 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin | 0.66 | 51.0 | 4.83e-01 | 80.9% | 85.2% |
| 5011401 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.64 | 49.0 | 5.09e-01 | 80.0% | 87.6% |
| 1236190 | 11.1.5.45 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GramPos_pilinBB | 0.64 | 46.0 | 4.21e-01 | 82.6% | 55.8% |
| 5040611 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.64 | 47.0 | 4.98e-01 | 76.5% | 92.0% |
| 5047849 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.64 | 47.0 | 5.05e-01 | 79.1% | 92.6% |
| 5049603 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.63 | 47.0 | 4.88e-01 | 77.4% | 93.3% |
| 4990427 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.63 | 47.0 | 4.93e-01 | 78.3% | 91.3% |
| 2983651 | 11.1.5.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › AgI_II_C2 | 0.63 | 49.0 | 4.43e-01 | 82.6% | 60.9% |
| 3471366 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 47.0 | 4.66e-01 | 80.0% | 90.4% |
| 5058603 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.62 | 46.0 | 4.70e-01 | 77.4% | 86.4% |
| 3244602 | 11.1.1.889 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26428 | 0.62 | 38.0 | 4.42e-01 | 76.5% | 87.5% |
| 5001227 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.62 | 46.0 | 4.77e-01 | 78.3% | 87.6% |
| 4947057 | 1.1.4.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C | 0.62 | 46.0 | 4.76e-01 | 78.3% | 90.5% |
| 331482 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.62 | 45.0 | 4.83e-01 | 77.4% | 94.9% |
| 4335811 | 11.1.5.42 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Antigen_C | 0.62 | 48.0 | 4.25e-01 | 82.6% | 62.4% |
| 4996262 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.62 | 46.0 | 4.76e-01 | 78.3% | 90.5% |
| 5035333 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.61 | 45.0 | 4.79e-01 | 78.3% | 91.0% |
| 5023349 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.60 | 44.0 | 4.66e-01 | 77.4% | 89.0% |
| 5057553 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.59 | 43.0 | 4.70e-01 | 79.1% | 96.7% |
| 3590065 | 11.1.5.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › AgI_II_C2 | 0.58 | 43.0 | 3.99e-01 | 82.6% | 60.7% |
| 3256977 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.58 | 49.0 | 3.85e-01 | 93.0% | 57.6% |
| 3472005 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 42.0 | 4.46e-01 | 77.4% | 88.0% |
| 2163572 | 11.1.5.45 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GramPos_pilinBB | 0.56 | 44.0 | 3.94e-01 | 82.6% | 59.0% |
| 3938564 | 385.1.1.2 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › TGF_beta | 0.56 | 42.0 | 3.19e-01 | 80.9% | 37.5% |
| 3223751 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.56 | 42.0 | 3.49e-01 | 80.9% | 47.1% |
| 3288338 | 1.1.7.27 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905 | 0.55 | 42.0 | 4.56e-01 | 81.7% | 97.8% |
| 3542883 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 42.0 | 3.97e-01 | 79.1% | 85.2% |
| 3432142 | 10.32.1.198 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 | 0.54 | 41.0 | 3.40e-01 | 81.7% | 55.0% |
| 3653845 | 10.32.1.198 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 | 0.54 | 41.0 | 3.61e-01 | 79.1% | 93.5% |
| 4600813 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.54 | 40.0 | 4.10e-01 | 80.9% | 81.8% |
| 3744064 | 1.1.7.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN | 0.53 | 37.0 | 4.11e-01 | 78.3% | 93.3% |
| 3886020 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.53 | 41.0 | 3.29e-01 | 81.7% | 44.0% |
| 3302977 | 207.1.1.37 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID | 0.53 | 46.0 | 3.36e-01 | 98.3% | 62.7% |
| 3891158 | 1.1.7.90 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 | 0.52 | 39.0 | 3.92e-01 | 79.1% | 85.2% |
| 3630969 | 11.1.1.55 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mo-co_dimer | 0.52 | 39.0 | 3.66e-01 | 80.9% | 73.1% |
| 3887526 | 304.24.1.18 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › TYW2_N | 0.51 | 29.0 | 3.35e-01 | 86.1% | 74.1% |
| 2629938 | 11.1.5.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Cohesin | 0.51 | 37.0 | 3.41e-01 | 82.6% | 56.1% |
| 3689766 | 11.1.1.55 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mo-co_dimer | 0.51 | 39.0 | 3.70e-01 | 80.9% | 78.6% |
D5
medium
residues 90-168_264-313
D6
medium
residues 655-771