←Back to structures
SRR1747023_scaffold_5_prodigal-single.1__X__X__00242
Bact-VirSRR1747023_scaffold_5_prodigal-single.1__X__X__00242
Identity
- Kingdom:
- phage
Quality
61.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 58-109
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19474.5 best | DUF6011 | 42.0 | 7.40e-11 | 55.8% | 70.3% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gueB01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.72 | 37.0 | 2.18e-01 | 90.4% | 7.2% |
| 4uf0A03 | 2.10.110.20 | Mainly Beta › Ribbon › Cysteine Rich Protein › | 0.62 | 45.0 | 4.17e-01 | 76.9% | 73.8% |
| 1y8fA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.61 | 41.0 | 4.22e-01 | 71.2% | 78.4% |
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.61 | 51.0 | 3.90e-01 | 98.1% | 40.0% |
| 2ecjA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 43.0 | 4.18e-01 | 76.9% | 81.0% |
| 3zg9A00 | 6.20.370.110 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.59 | 29.0 | 3.18e-01 | 76.9% | 53.7% |
| 2w5qA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 39.0 | 3.29e-01 | 94.2% | 39.8% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.56 | 43.0 | 4.00e-01 | 90.4% | 66.7% |
| 4fk1A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 44.0 | 3.04e-01 | 92.3% | 34.2% |
| 1rfhA01 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.53 | 37.0 | 3.99e-01 | 73.1% | 97.6% |
| 4l3uA00 | 1.20.1480.40 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 | 0.53 | 40.0 | 3.05e-01 | 92.3% | 34.1% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.53 | 46.0 | 3.12e-01 | 98.1% | 82.1% |
| 2cshA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 40.0 | 3.42e-01 | 88.5% | 60.0% |
| 5gkxA00 | 3.90.1640.20 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › TON_0340 | 0.51 | 45.0 | 2.89e-01 | 100.0% | 86.9% |
| 5ar1A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 2.93e-01 | 100.0% | 89.3% |
| 2darA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.51 | 42.0 | 3.80e-01 | 94.2% | 93.1% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3181604 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.71 | 61.0 | 4.97e-01 | 96.2% | 72.6% |
| 3936791 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 53.0 | 4.51e-01 | 84.6% | 57.6% |
| 3322017 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 47.0 | 5.19e-01 | 76.9% | 100.0% |
| 3431728 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 52.0 | 5.13e-01 | 88.5% | 85.5% |
| 3880852 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.64 | 47.0 | 4.97e-01 | 80.8% | 100.0% |
| 3817316 | 376.1.4.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog | 0.63 | 38.0 | 3.45e-01 | 71.2% | 41.3% |
| 3239632 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.63 | 44.0 | 3.81e-01 | 75.0% | 50.6% |
| 3302328 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.62 | 48.0 | 4.92e-01 | 88.5% | 100.0% |
| 3875972 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.61 | 43.0 | 4.66e-01 | 76.9% | 97.5% |
| 3251800 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.61 | 49.0 | 4.88e-01 | 92.3% | 94.5% |
| 3584930 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.61 | 49.0 | 4.72e-01 | 92.3% | 86.7% |
| 3463111 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 43.0 | 4.23e-01 | 90.4% | 70.0% |
| 4024577 | 376.1.1.61 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 | 0.61 | 49.0 | 4.55e-01 | 96.2% | 70.0% |
| 3183086 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 46.0 | 4.91e-01 | 84.6% | 97.8% |
| 3834267 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.60 | 44.0 | 3.76e-01 | 92.3% | 46.3% |
| 3903603 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 47.0 | 4.25e-01 | 90.4% | 66.7% |
| 3244935 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.60 | 44.0 | 3.69e-01 | 80.8% | 51.6% |
| 3691998 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.59 | 47.0 | 4.47e-01 | 96.2% | 83.1% |
| 3522813 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.57 | 39.0 | 3.49e-01 | 78.8% | 46.3% |
| 3739728 | 376.1.4.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog | 0.57 | 39.0 | 3.93e-01 | 75.0% | 74.5% |
| 3481637 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 37.0 | 3.74e-01 | 78.8% | 71.7% |
| 3228275 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.54 | 43.0 | 2.67e-01 | 86.5% | 25.8% |
| 3883436 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 39.0 | 4.02e-01 | 86.5% | 95.6% |
| 3341478 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 37.0 | 3.93e-01 | 73.1% | 100.0% |
| 3716610 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 40.0 | 3.18e-01 | 92.3% | 41.0% |
| 3796896 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 34.0 | 3.61e-01 | 71.2% | 80.0% |
| 3610595 | 3131.1.1.3 ↗ | a+b two layers › FYR domain › FYR domain › FYR domain › FYRC | 0.52 | 43.0 | 3.28e-01 | 100.0% | 59.4% |
| 5027458 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.51 | 41.0 | 2.77e-01 | 86.5% | 85.2% |
| 4004118 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.50 | 45.0 | 3.05e-01 | 100.0% | 29.7% |