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SRR1747023_scaffold_5_prodigal-single.1__X__X__00246
Bact-VirSRR1747023_scaffold_5_prodigal-single.1__X__X__00246
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-53
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aueB00 | 1.20.120.150 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain | 0.76 | 52.0 | 4.28e-01 | 71.7% | 54.3% |
| 2aw6A02 | 1.25.40.400 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.73 | 53.0 | 3.46e-01 | 77.4% | 42.1% |
| 3cskA02 | 3.30.540.30 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › | 0.72 | 52.0 | 3.65e-01 | 75.5% | 24.7% |
| 7vevA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.71 | 52.0 | 3.36e-01 | 77.4% | 18.5% |
| 7zmgL01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 51.0 | 4.48e-01 | 77.4% | 76.2% |
| 1gqeA01 | 1.20.58.410 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor | 0.67 | 51.0 | 4.05e-01 | 83.0% | 92.9% |
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.65 | 45.0 | 4.37e-01 | 81.1% | 65.6% |
| 1cpyA02 | 1.10.287.410 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 45.0 | 4.17e-01 | 81.1% | 91.7% |
| 1vq8O00 | 3.100.10.10 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › | 0.62 | 47.0 | 3.74e-01 | 84.9% | 93.9% |
| 4tq1A03 | 1.10.246.190 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Autophagy protein Apg5, helix rich domain | 0.60 | 45.0 | 4.45e-01 | 84.9% | 89.7% |
| 2bkkC02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.57 | 42.0 | 2.95e-01 | 94.3% | 24.3% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 40.0 | 3.71e-01 | 81.1% | 72.0% |
| 1l8qA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 40.0 | 4.09e-01 | 84.9% | 87.8% |
| 2vkpB00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.55 | 36.0 | 2.94e-01 | 73.6% | 32.1% |
| 4kjmB01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.51 | 37.0 | 3.58e-01 | 83.0% | 88.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3708959 | 601.24.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FRB_dom | 0.74 | 52.0 | 4.27e-01 | 73.6% | 53.7% |
| 4683274 | 3843.1.1.6 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF | 0.71 | 52.0 | 4.56e-01 | 77.4% | 75.0% |
| 3599095 | 601.24.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 0.70 | 50.0 | 4.04e-01 | 75.5% | 52.0% |
| 5037615 | 2490.3.1.0 ↗ | a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal proteins L15p and L18e › Ribosomal proteins L15p and L18e | 0.67 | 53.0 | 4.10e-01 | 86.8% | 94.8% |
| 3538067 | 633.10.1.15 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Transmemb_17 | 0.66 | 48.0 | 4.01e-01 | 75.5% | 78.9% |
| 3223055 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.66 | 46.0 | 2.52e-01 | 73.6% | 6.8% |
| 5031855 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.63 | 47.0 | 4.19e-01 | 81.1% | 80.0% |
| 1182013 | 109.4.1.1123 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PSMD3_N | 0.61 | 42.0 | 2.96e-01 | 73.6% | 21.3% |
| 3624115 | 109.6.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF | 0.58 | 52.0 | 3.17e-01 | 100.0% | 50.0% |
| 4065433 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 46.0 | 2.97e-01 | 96.2% | 19.3% |
| 3878696 | 2004.1.1.149 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD | 0.53 | 42.0 | 2.49e-01 | 100.0% | 14.1% |
| 3264784 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.53 | 44.0 | 2.63e-01 | 100.0% | 55.7% |
D2
high
residues 63-116
Domain cluster:
representative
CATH (62)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mloA03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.78 | 65.0 | 6.23e-01 | 90.7% | 88.5% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 57.0 | 5.52e-01 | 88.9% | 71.7% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 57.0 | 5.05e-01 | 88.9% | 55.0% |
| 2o8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 57.0 | 5.51e-01 | 88.9% | 73.8% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 55.0 | 4.93e-01 | 88.9% | 56.2% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.73 | 57.0 | 4.78e-01 | 94.4% | 50.0% |
| 3frwB00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.73 | 64.0 | 5.26e-01 | 100.0% | 55.2% |
| 4go1A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 60.0 | 6.07e-01 | 94.4% | 94.4% |
| 1y0uA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 58.0 | 4.97e-01 | 90.7% | 65.2% |
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 56.0 | 5.34e-01 | 88.9% | 73.8% |
| 5f7qC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 56.0 | 5.26e-01 | 90.7% | 72.9% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 53.0 | 5.32e-01 | 90.7% | 80.0% |
| 1tc3C00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 50.0 | 5.14e-01 | 92.6% | 84.3% |
| 4pcqA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 49.0 | 5.11e-01 | 77.8% | 90.0% |
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 52.0 | 5.19e-01 | 94.4% | 82.1% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 55.0 | 5.24e-01 | 90.7% | 76.2% |
| 2xz2A00 | 1.20.960.50 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › Cleavage stimulation factor subunit 1, dimerisation domain | 0.69 | 50.0 | 4.70e-01 | 96.3% | 63.6% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 53.0 | 5.09e-01 | 90.7% | 76.1% |
| 2nyxB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 53.0 | 3.98e-01 | 88.9% | 46.5% |
| 2v9vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 51.0 | 4.98e-01 | 92.6% | 76.7% |
| 2llkA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 48.0 | 5.28e-01 | 77.8% | 100.0% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 55.0 | 4.82e-01 | 98.1% | 100.0% |
| 1z05A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 53.0 | 4.92e-01 | 94.4% | 100.0% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 5.41e-01 | 92.6% | 98.0% |
| 3ez0C00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 57.0 | 3.82e-01 | 98.1% | 37.0% |
| 3dewA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 49.0 | 4.98e-01 | 85.2% | 100.0% |
| 3bddD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 54.0 | 4.24e-01 | 100.0% | 60.6% |
| 1umqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 51.0 | 4.97e-01 | 87.0% | 83.3% |
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.65 | 56.0 | 4.74e-01 | 100.0% | 94.7% |
| 1uujA00 | 1.20.960.30 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.65 | 53.0 | 4.79e-01 | 96.3% | 65.8% |
| 2cmpA00 | 1.10.10.1400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Terminase, small subunit, N-terminal DNA-binding domain, HTH motif | 0.65 | 54.0 | 5.34e-01 | 92.6% | 94.6% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 50.0 | 5.11e-01 | 88.9% | 98.1% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 50.0 | 4.32e-01 | 87.0% | 64.4% |
| 1konA01 | 1.10.10.200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain | 0.64 | 53.0 | 4.95e-01 | 96.3% | 73.5% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 54.0 | 4.51e-01 | 100.0% | 92.2% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.64 | 55.0 | 3.89e-01 | 98.1% | 38.0% |
| 2hdoA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 55.0 | 5.22e-01 | 96.3% | 81.2% |
| 1ef4A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 49.0 | 4.95e-01 | 92.6% | 87.3% |
| 2ia0A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 50.0 | 5.05e-01 | 88.9% | 90.7% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 4.74e-01 | 96.3% | 91.7% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.62 | 52.0 | 3.97e-01 | 100.0% | 87.9% |
| 3lstA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 48.0 | 4.20e-01 | 94.4% | 55.8% |
| 3cuqB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 50.0 | 4.72e-01 | 98.1% | 97.1% |
| 2y44A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.60 | 42.0 | 2.92e-01 | 74.1% | 51.6% |
| 3d0sA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 48.0 | 4.36e-01 | 98.1% | 92.5% |
| 2m8gX00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 46.0 | 4.33e-01 | 90.7% | 70.0% |
| 1sgmA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 48.0 | 3.50e-01 | 100.0% | 66.8% |
| 3beyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.59 | 48.0 | 4.17e-01 | 100.0% | 56.4% |
| 1lucB00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.58 | 44.0 | 2.74e-01 | 83.3% | 20.0% |
| 2b81C00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.58 | 44.0 | 2.73e-01 | 83.3% | 19.7% |
| 5hxgB00 | 1.10.4000.10 | Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD | 0.57 | 40.0 | 3.88e-01 | 90.7% | 64.6% |
| 3n98A01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.57 | 49.0 | 2.95e-01 | 98.1% | 15.6% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 47.0 | 3.93e-01 | 98.1% | 51.5% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.56 | 42.0 | 4.01e-01 | 83.3% | 69.2% |
| 5i1uA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 47.0 | 3.01e-01 | 98.1% | 53.3% |
| 2cwqA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.56 | 45.0 | 3.65e-01 | 100.0% | 42.9% |
| 5z4zC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 45.0 | 3.92e-01 | 94.4% | 70.5% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 47.0 | 4.10e-01 | 100.0% | 66.7% |
| 4y0bA00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.52 | 44.0 | 3.29e-01 | 96.3% | 67.1% |
| 1ynbA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 44.0 | 3.17e-01 | 98.1% | 33.5% |
| 3op9A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 34.0 | 3.28e-01 | 75.9% | 55.9% |
| 2hpiA03 | 1.10.10.1600 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain | 0.51 | 38.0 | 3.63e-01 | 100.0% | 67.6% |
ECOD (90)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3286778 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.82 | 63.0 | 5.75e-01 | 88.9% | 64.3% |
| 4980021 | 101.1.3.33 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF134 | 0.81 | 62.0 | 5.72e-01 | 88.9% | 64.3% |
| 5064701 | 101.1.2.879 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF134 | 0.80 | 61.0 | 5.38e-01 | 88.9% | 56.2% |
| 3959929 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.80 | 61.0 | 5.40e-01 | 88.9% | 56.2% |
| 4336182 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 64.0 | 5.43e-01 | 88.9% | 53.3% |
| 4303963 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.80 | 61.0 | 5.47e-01 | 88.9% | 60.0% |
| 4454772 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.79 | 60.0 | 5.73e-01 | 88.9% | 69.2% |
| 4944862 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 60.0 | 5.28e-01 | 88.9% | 56.2% |
| 4396640 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.79 | 60.0 | 4.64e-01 | 88.9% | 37.5% |
| 4997411 | 101.1.3.33 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF134 | 0.79 | 60.0 | 5.29e-01 | 88.9% | 56.2% |
| 4534822 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.79 | 60.0 | 5.39e-01 | 88.9% | 60.0% |
| 4947436 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 60.0 | 5.98e-01 | 88.9% | 81.8% |
| 4205790 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.79 | 60.0 | 5.29e-01 | 88.9% | 56.2% |
| 4059731 | 101.1.1.64 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 | 0.78 | 59.0 | 4.81e-01 | 88.9% | 42.9% |
| 4334910 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.78 | 59.0 | 4.54e-01 | 88.9% | 36.0% |
| 4068904 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 59.0 | 6.42e-01 | 81.5% | 100.0% |
| 4034281 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 60.0 | 4.77e-01 | 88.9% | 41.8% |
| 3284469 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.77 | 58.0 | 5.29e-01 | 88.9% | 60.0% |
| 2330636 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.77 | 58.0 | 5.90e-01 | 88.9% | 84.9% |
| 1291824 | 101.1.1.95 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PhyR_sigma-like | 0.77 | 58.0 | 6.05e-01 | 88.9% | 93.8% |
| 3926525 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.77 | 54.0 | 6.13e-01 | 77.8% | 100.0% |
| 3282225 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.76 | 57.0 | 5.10e-01 | 88.9% | 56.2% |
| 3759371 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 62.0 | 5.35e-01 | 100.0% | 56.2% |
| 3590753 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 58.0 | 5.94e-01 | 94.4% | 90.0% |
| 4944726 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 56.0 | 5.52e-01 | 88.9% | 75.0% |
| 4160122 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.75 | 56.0 | 4.14e-01 | 88.9% | 30.0% |
| 3959252 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.75 | 57.0 | 5.58e-01 | 88.9% | 75.0% |
| 3967748 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.75 | 56.0 | 4.91e-01 | 88.9% | 52.9% |
| 4954539 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 57.0 | 5.90e-01 | 87.0% | 96.0% |
| 4007596 | 101.1.2.139 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_23 | 0.73 | 56.0 | 5.80e-01 | 92.6% | 92.0% |
| 4979101 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 61.0 | 5.81e-01 | 100.0% | 83.8% |
| 3283500 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.73 | 59.0 | 6.12e-01 | 92.6% | 98.0% |
| 5041617 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 59.0 | 4.92e-01 | 94.4% | 52.2% |
| 4530655 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.73 | 57.0 | 4.75e-01 | 88.9% | 48.0% |
| 3733699 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 59.0 | 4.80e-01 | 98.1% | 47.6% |
| 5002651 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.73 | 62.0 | 5.25e-01 | 100.0% | 92.6% |
| 4541333 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 54.0 | 5.57e-01 | 87.0% | 90.0% |
| 3879118 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.72 | 55.0 | 5.48e-01 | 94.4% | 83.6% |
| 4280807 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.72 | 56.0 | 5.61e-01 | 98.1% | 87.3% |
| 4028394 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.72 | 59.0 | 4.61e-01 | 98.1% | 40.8% |
| 4202221 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.72 | 53.0 | 5.05e-01 | 88.9% | 66.2% |
| 4093687 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.72 | 62.0 | 5.25e-01 | 98.1% | 82.2% |
| 3860590 | 101.1.1.101 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 | 0.72 | 54.0 | 5.61e-01 | 87.0% | 90.0% |
| 5007028 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.71 | 54.0 | 5.47e-01 | 92.6% | 83.6% |
| 5027753 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 53.0 | 5.66e-01 | 83.3% | 97.8% |
| 3738604 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 61.0 | 5.00e-01 | 100.0% | 72.4% |
| 3959876 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.71 | 56.0 | 4.65e-01 | 88.9% | 48.0% |
| 3793383 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.71 | 59.0 | 5.62e-01 | 98.1% | 80.0% |
| 3795916 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 54.0 | 5.71e-01 | 88.9% | 100.0% |
| 3857628 | 101.1.3.29 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › CENP-B_N | 0.71 | 55.0 | 5.22e-01 | 98.1% | 72.3% |
| 4926820 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.71 | 62.0 | 5.25e-01 | 100.0% | 75.6% |
| None | — | 0.71 | 57.0 | 4.88e-01 | 94.4% | 54.4% | |
| 3279339 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.71 | 56.0 | 3.91e-01 | 88.9% | 25.9% |
| 4977146 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 61.0 | 4.96e-01 | 96.3% | 53.0% |
| 3452941 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 56.0 | 5.74e-01 | 98.1% | 100.0% |
| 4133453 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 59.0 | 5.93e-01 | 96.3% | 94.5% |
| 5011671 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 56.0 | 4.60e-01 | 90.7% | 48.0% |
| 3967026 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.70 | 56.0 | 5.04e-01 | 90.7% | 64.0% |
| 4175748 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.70 | 55.0 | 4.92e-01 | 88.9% | 60.0% |
| 3942897 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 55.0 | 4.99e-01 | 92.6% | 65.0% |
| 3568862 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.70 | 55.0 | 5.23e-01 | 98.1% | 73.8% |
| 3951829 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.70 | 54.0 | 4.74e-01 | 88.9% | 55.3% |
| 3971395 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.70 | 55.0 | 5.00e-01 | 90.7% | 64.0% |
| 4928270 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.70 | 51.0 | 5.41e-01 | 85.2% | 97.8% |
| 4683276 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.70 | 56.0 | 4.72e-01 | 90.7% | 51.6% |
| 4289285 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.70 | 62.0 | 5.22e-01 | 100.0% | 86.7% |
| 3961604 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.70 | 62.0 | 5.06e-01 | 100.0% | 94.0% |
| 4165188 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.70 | 55.0 | 4.82e-01 | 90.7% | 56.5% |
| 4244028 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.70 | 56.0 | 5.48e-01 | 94.4% | 81.7% |
| 4237551 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.70 | 55.0 | 4.64e-01 | 90.7% | 50.5% |
| 3959868 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 54.0 | 4.92e-01 | 88.9% | 62.7% |
| 3958096 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 55.0 | 4.67e-01 | 88.9% | 54.4% |
| 4663875 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.69 | 55.0 | 3.59e-01 | 90.7% | 20.0% |
| 4146353 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.69 | 54.0 | 4.77e-01 | 88.9% | 58.7% |
| 3932988 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 54.0 | 5.38e-01 | 100.0% | 89.1% |
| 3971149 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.68 | 54.0 | 4.85e-01 | 90.7% | 62.5% |
| 3920862 | 101.1.1.221 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CCDC106 | 0.68 | 57.0 | 5.85e-01 | 100.0% | 100.0% |
| 3163613 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 53.0 | 4.98e-01 | 90.7% | 68.6% |
| 3283374 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.68 | 53.0 | 4.51e-01 | 88.9% | 52.6% |
| 4934485 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.67 | 54.0 | 4.93e-01 | 94.4% | 66.2% |
| 3972638 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.67 | 52.0 | 5.00e-01 | 90.7% | 73.8% |
| 3657907 | 109.4.1.462 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_4 | 0.65 | 56.0 | 4.31e-01 | 98.1% | 72.0% |
| 3969641 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.65 | 53.0 | 4.76e-01 | 94.4% | 82.5% |
| 3284051 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.65 | 52.0 | 4.91e-01 | 90.7% | 73.8% |
| 4995713 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 54.0 | 4.51e-01 | 94.4% | 58.9% |
| 3873677 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.64 | 50.0 | 4.69e-01 | 92.6% | 70.0% |
| None | — | 0.63 | 55.0 | 4.71e-01 | 100.0% | 62.2% | |
| 4386055 | 2005.1.1.47 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans | 0.58 | 48.0 | 3.21e-01 | 100.0% | 25.5% |
| None | — | 0.57 | 46.0 | 3.15e-01 | 100.0% | 21.2% | |
| 4928203 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.56 | 43.0 | 3.06e-01 | 87.0% | 25.9% |