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SRR1747023_scaffold_5_prodigal-single.1__X__X__00266
Bact-VirSRR1747023_scaffold_5_prodigal-single.1__X__X__00266
Identity
- Kingdom:
- phage
Quality
72.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-59
Domain cluster:
rep: aot2015-SM37_SRR1761715_Peru_trim_clean_trim_clean_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00241__D11-53
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hm2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.68 | 50.0 | 3.44e-01 | 82.2% | 45.6% |
| 3k0yA02 | 2.60.40.2370 | Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain | 0.65 | 52.0 | 3.77e-01 | 91.1% | 45.1% |
| 7co7D03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.64 | 49.0 | 3.99e-01 | 88.9% | 44.7% |
| 1l3iA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 45.0 | 3.11e-01 | 82.2% | 44.3% |
| 2kjkA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.60 | 48.0 | 3.93e-01 | 100.0% | 55.0% |
| 2wnwA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 49.0 | 3.88e-01 | 100.0% | 65.1% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.59 | 42.0 | 2.84e-01 | 75.6% | 79.2% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 42.0 | 3.47e-01 | 97.8% | 38.5% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.59 | 45.0 | 3.76e-01 | 91.1% | 63.0% |
| 2qlvB02 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.59 | 42.0 | 4.45e-01 | 84.4% | 92.1% |
| 1tgjA00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.58 | 43.0 | 3.35e-01 | 86.7% | 66.1% |
| 3kzwA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.57 | 44.0 | 3.17e-01 | 93.3% | 46.8% |
| 1hfvA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 45.0 | 3.17e-01 | 95.6% | 77.4% |
| 1u0kA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.56 | 48.0 | 3.52e-01 | 100.0% | 51.5% |
| 7y8sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 3.44e-01 | 88.9% | 64.2% |
| 4wjmA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 42.0 | 2.57e-01 | 86.7% | 29.8% |
| 4l3rA00 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 42.0 | 2.96e-01 | 84.4% | 39.2% |
| 1m1jE01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.55 | 43.0 | 3.17e-01 | 100.0% | 57.6% |
| 2r7rA05 | 1.10.357.80 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.55 | 44.0 | 3.07e-01 | 97.8% | 65.9% |
| 5di3B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 2.88e-01 | 93.3% | 61.3% |
| 3h09A04 | 4.10.1240.40 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.55 | 43.0 | 3.83e-01 | 95.6% | 93.1% |
| 1fm2B01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 41.0 | 2.68e-01 | 100.0% | 36.6% |
| 2w0mA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 2.62e-01 | 86.7% | 74.1% |
| 5b55A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 37.0 | 2.57e-01 | 80.0% | 34.7% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.52 | 39.0 | 3.34e-01 | 84.4% | 53.8% |
| 4e69A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 38.0 | 2.37e-01 | 84.4% | 30.0% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 39.0 | 2.78e-01 | 91.1% | 47.5% |
| 2b0aA00 | 3.50.30.50 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase | 0.51 | 36.0 | 2.48e-01 | 80.0% | 72.0% |
| 4emeC02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.51 | 38.0 | 2.87e-01 | 88.9% | 80.0% |
| 1bikA00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.51 | 36.0 | 2.91e-01 | 93.3% | 33.6% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4223490 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.73 | 51.0 | 3.28e-01 | 75.6% | 38.1% |
| 3168821 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.64 | 45.0 | 2.67e-01 | 73.3% | 13.3% |
| 5079388 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.64 | 52.0 | 3.50e-01 | 95.6% | 32.6% |
| 4516909 | 213.1.1.8 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HlyC | 0.64 | 48.0 | 3.36e-01 | 86.7% | 30.9% |
| 3743872 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.62 | 47.0 | 3.57e-01 | 86.7% | 53.3% |
| 3293552 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.62 | 47.0 | 3.41e-01 | 88.9% | 75.2% |
| 4530309 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.62 | 47.0 | 4.02e-01 | 86.7% | 66.3% |
| 3193792 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.62 | 48.0 | 3.31e-01 | 86.7% | 36.0% |
| 4096358 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.62 | 41.0 | 2.78e-01 | 71.1% | 40.0% |
| 4011046 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.62 | 47.0 | 3.45e-01 | 86.7% | 51.1% |
| 4586504 | 11.1.5.85 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C | 0.62 | 48.0 | 3.18e-01 | 91.1% | 78.5% |
| 3931584 | 385.1.1.2 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › TGF_beta | 0.61 | 48.0 | 3.65e-01 | 86.7% | 64.5% |
| 3931076 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.61 | 49.0 | 3.77e-01 | 97.8% | 38.3% |
| 5034202 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.61 | 47.0 | 3.00e-01 | 88.9% | 18.4% |
| 3259162 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.61 | 46.0 | 3.49e-01 | 88.9% | 44.0% |
| 4127806 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.61 | 46.0 | 3.89e-01 | 86.7% | 64.7% |
| 3576255 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.61 | 46.0 | 3.51e-01 | 86.7% | 61.7% |
| 3623169 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.60 | 47.0 | 3.83e-01 | 97.8% | 41.0% |
| 5054965 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.60 | 49.0 | 3.76e-01 | 100.0% | 45.0% |
| 4117423 | 3585.1.1.1 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA_pol_IIIA_C | 0.60 | 46.0 | 3.98e-01 | 86.7% | 65.3% |
| 4318785 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.60 | 46.0 | 3.96e-01 | 86.7% | 67.6% |
| 3838290 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.59 | 44.0 | 4.03e-01 | 84.4% | 72.3% |
| 3969045 | 3585.1.1.1 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA_pol_IIIA_C | 0.59 | 44.0 | 3.77e-01 | 86.7% | 62.7% |
| 4631587 | 825.1.1.0 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins | 0.59 | 48.0 | 3.03e-01 | 95.6% | 63.5% |
| 3299789 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.59 | 44.0 | 3.22e-01 | 88.9% | 59.3% |
| 3509076 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.58 | 48.0 | 2.88e-01 | 100.0% | 13.4% |
| 4459239 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.58 | 44.0 | 3.78e-01 | 86.7% | 62.5% |
| 3698880 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.58 | 47.0 | 2.94e-01 | 100.0% | 16.1% |
| 3921728 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.57 | 38.0 | 2.87e-01 | 71.1% | 26.1% |
| 5022074 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.57 | 42.0 | 2.79e-01 | 80.0% | 75.5% |
| 137715 | 7529.1.1.3 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N | 0.57 | 44.0 | 3.08e-01 | 93.3% | 42.0% |
| 3588071 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 45.0 | 3.29e-01 | 100.0% | 43.8% |
| 3603126 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 41.0 | 2.74e-01 | 82.2% | 36.2% |
| 3739517 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 46.0 | 3.01e-01 | 95.6% | 49.0% |
| 3781180 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 42.0 | 3.32e-01 | 91.1% | 76.4% |
| 1070881 | 9.1.1.26 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF4847 | 0.55 | 42.0 | 2.95e-01 | 84.4% | 38.9% |
| 3236563 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.55 | 36.0 | 2.69e-01 | 71.1% | 24.0% |
| 4106255 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.53 | 41.0 | 3.25e-01 | 95.6% | 56.5% |
| 3475708 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.53 | 40.0 | 4.04e-01 | 88.9% | 79.5% |
| 4044734 | 6076.1.1.1 ↗ | alpha arrays › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › UBA_E1_SCCH | 0.53 | 38.0 | 2.84e-01 | 84.4% | 26.9% |
| 2446831 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 3.81e-01 | 77.8% | 89.1% |
| 3920450 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.53 | 37.0 | 2.48e-01 | 80.0% | 23.9% |
| 5046995 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 41.0 | 3.14e-01 | 100.0% | 88.6% |
| 4939072 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.52 | 45.0 | 3.13e-01 | 95.6% | 84.8% |
| 4221708 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.52 | 42.0 | 3.72e-01 | 93.3% | 70.0% |
| 3747930 | 6006.1.1.4 ↗ | extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF28678 | 0.52 | 41.0 | 3.39e-01 | 86.7% | 65.0% |
| 3282173 | 2004.1.1.689 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21 | 0.51 | 37.0 | 2.36e-01 | 95.6% | 98.4% |
| 4240628 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.51 | 37.0 | 2.54e-01 | 88.9% | 90.9% |