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SRR1747026_scaffold_22_prodigal-single.1__X__X__00057
Bact-VirSRR1747026_scaffold_22_prodigal-single.1__X__X__00057
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-52_73-233
Domain cluster:
rep: pre1_saliva_scaffold_4_prodigal-single.1__X__X__00177__D61-102_106-112_123-254
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.71 | 51.0 | 5.46e-01 | 100.0% | 83.7% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.69 | 52.0 | 5.52e-01 | 100.0% | 87.7% |
| 5iqaA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.68 | 27.0 | 3.77e-01 | 78.3% | 72.2% |
| 2gk9B01 | 3.30.800.10 | Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta | 0.68 | 27.0 | 2.99e-01 | 76.6% | 42.7% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 25.0 | 3.66e-01 | 80.4% | 80.8% |
| 2k4qA00 | 4.10.410.40 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › | 0.62 | 43.0 | 4.69e-01 | 95.7% | 82.7% |
| 4wqmA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 28.0 | 3.72e-01 | 91.8% | 78.6% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.61 | 29.0 | 3.75e-01 | 82.1% | 76.4% |
| 1op4A01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.59 | 20.0 | 2.74e-01 | 82.1% | 56.2% |
| 2qeaB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 34.0 | 3.70e-01 | 98.9% | 67.9% |
| 5dnoA00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.57 | 35.0 | 3.76e-01 | 95.7% | 68.3% |
| 1elvA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 28.0 | 3.72e-01 | 99.5% | 86.7% |
| 3atsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 27.0 | 3.36e-01 | 79.3% | 70.7% |
| 2w59A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 27.0 | 3.46e-01 | 81.5% | 79.0% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 22.0 | 3.30e-01 | 78.3% | 90.4% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 22.0 | 3.00e-01 | 77.7% | 72.7% |
| 4k7rA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.54 | 21.0 | 3.09e-01 | 100.0% | 80.5% |
| 5eb9A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 24.0 | 3.01e-01 | 81.0% | 67.0% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.52 | 31.0 | 3.72e-01 | 96.7% | 89.1% |
| 3bpkA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 36.0 | 3.73e-01 | 98.9% | 73.2% |
| 2pn5A07 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 24.0 | 3.09e-01 | 81.5% | 76.4% |
| 2pn5A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.50 | 22.0 | 2.90e-01 | 81.5% | 72.9% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4140243 | 1.1.5.82 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 | 0.80 | 46.0 | 5.73e-01 | 98.4% | 89.6% |
| 4995820 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.79 | 53.0 | 6.27e-01 | 98.4% | 96.2% |
| 5003885 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.78 | 53.0 | 5.98e-01 | 98.9% | 88.3% |
| 2101663 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.78 | 57.0 | 6.09e-01 | 97.3% | 85.3% |
| 2471641 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.77 | 53.0 | 5.88e-01 | 99.5% | 85.9% |
| 4995819 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.76 | 58.0 | 6.38e-01 | 98.9% | 96.0% |
| 3581358 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.75 | 55.0 | 5.92e-01 | 98.4% | 87.7% |
| 2832217 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.74 | 52.0 | 5.84e-01 | 99.5% | 91.5% |
| 2471637 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.73 | 53.0 | 5.78e-01 | 100.0% | 91.3% |
| 3023894 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.71 | 51.0 | 5.57e-01 | 97.8% | 89.9% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.70 | 52.0 | 5.62e-01 | 98.9% | 90.8% |
| 3942090 | 1.1.5.77 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube | 0.70 | 48.0 | 5.09e-01 | 100.0% | 78.2% |
| 3096576 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.70 | 50.0 | 5.34e-01 | 98.4% | 84.3% |
| 2074267 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.68 | 52.0 | 5.58e-01 | 100.0% | 90.0% |
| 4032554 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 50.0 | 5.31e-01 | 100.0% | 84.8% |
| 3966479 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 53.0 | 5.58e-01 | 100.0% | 90.9% |
| 3590380 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 51.0 | 5.23e-01 | 100.0% | 82.2% |
| 5004308 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 49.0 | 5.34e-01 | 100.0% | 91.6% |
| 4034209 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.60 | 42.0 | 4.87e-01 | 96.2% | 97.0% |
| 5012991 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.60 | 34.0 | 4.07e-01 | 96.2% | 83.3% |
| 4050380 | 1.1.7.95 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 | 0.60 | 29.0 | 3.81e-01 | 85.9% | 85.3% |
| 5022756 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 20.0 | 2.77e-01 | 95.7% | 58.9% |
| 5023086 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.57 | 33.0 | 3.95e-01 | 86.4% | 83.2% |
| 4989078 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.57 | 34.0 | 3.94e-01 | 86.4% | 82.0% |
| 5006840 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.56 | 33.0 | 3.87e-01 | 99.5% | 81.4% |
| 3977799 | 304.109.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › YecR | 0.55 | 27.0 | 3.79e-01 | 84.8% | 98.8% |
| 5043613 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.55 | 33.0 | 3.82e-01 | 95.7% | 84.0% |
| 4939497 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.53 | 32.0 | 3.78e-01 | 98.4% | 86.4% |
| 3495548 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 30.0 | 3.31e-01 | 92.4% | 68.0% |
| 3539133 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.52 | 15.0 | 2.49e-01 | 95.7% | 67.1% |
| 4135761 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.52 | 29.0 | 3.50e-01 | 80.4% | 82.5% |
| 3782746 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.51 | 21.0 | 2.64e-01 | 100.0% | 59.1% |