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SRR1747026_scaffold_22_prodigal-single.1__X__X__00073

Bact-Vir

SRR1747026_scaffold_22_prodigal-single.1__X__X__00073

Identity

Kingdom:
phage

Quality

87.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-130
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 68.0 5.83e-01 87.6% 57.0%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 69.0 7.20e-01 92.2% 94.1%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 69.0 7.19e-01 92.2% 95.0%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 69.0 7.37e-01 92.2% 100.0%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 73.0 7.49e-01 100.0% 98.4%
4trtA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 67.0 6.98e-01 86.8% 94.2%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 67.0 5.71e-01 87.6% 57.8%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 66.0 7.09e-01 92.2% 100.0%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 69.0 7.14e-01 98.4% 98.3%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 69.0 7.09e-01 100.0% 96.8%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 66.0 6.59e-01 87.6% 91.5%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 73.0 5.65e-01 100.0% 54.3%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 63.0 5.65e-01 84.5% 74.3%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 70.0 7.17e-01 100.0% 99.2%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 69.0 6.18e-01 100.0% 70.3%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 70.0 6.30e-01 100.0% 72.1%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 69.0 6.96e-01 99.2% 95.3%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 63.0 6.41e-01 86.8% 93.8%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 71.0 7.08e-01 98.4% 98.5%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 67.0 6.84e-01 92.2% 94.4%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 69.0 7.04e-01 96.9% 100.0%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 69.0 5.47e-01 100.0% 51.0%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 70.0 5.48e-01 100.0% 49.6%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 69.0 6.74e-01 98.4% 95.0%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 67.0 5.33e-01 100.0% 50.0%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 67.0 5.35e-01 100.0% 50.2%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 66.0 5.31e-01 100.0% 50.4%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 64.0 6.66e-01 98.4% 98.3%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 70.0 6.20e-01 100.0% 71.7%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 66.0 5.27e-01 99.2% 50.4%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 68.0 5.38e-01 100.0% 51.0%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 69.0 5.36e-01 100.0% 49.8%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 68.0 5.40e-01 100.0% 51.0%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.73 66.0 6.69e-01 98.4% 97.7%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 58.0 4.79e-01 89.1% 50.0%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 64.0 4.93e-01 100.0% 49.1%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 65.0 5.19e-01 98.4% 97.1%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 40.0 3.45e-01 77.5% 96.0%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.46e-01 96.9% 52.2%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 40.0 3.11e-01 86.0% 81.3%
3kljA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.50 30.0 3.66e-01 94.6% 92.8%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2392242 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.86 69.0 7.41e-01 94.6% 95.6%
4437554 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.85 71.0 7.28e-01 86.8% 90.4%
3787700 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.83 69.0 6.41e-01 86.0% 96.1%
3015239 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 68.0 7.08e-01 87.6% 91.6%
5043507 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 67.0 7.02e-01 85.3% 95.8%
3387590 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.82 65.0 6.88e-01 92.2% 92.2%
426904 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.81 68.0 7.01e-01 90.7% 91.9%
4650306 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 71.0 7.40e-01 98.4% 99.2%
3596476 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.81 66.0 6.39e-01 86.0% 94.4%
1549271 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.81 67.0 6.88e-01 86.8% 92.7%
3230925 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 67.0 6.70e-01 87.6% 92.3%
3997015 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 65.0 6.53e-01 85.3% 90.0%
1871494 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 70.0 7.28e-01 100.0% 99.2%
4030418 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 66.0 6.38e-01 86.0% 92.1%
2878147 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.80 67.0 6.55e-01 87.6% 85.4%
4372908 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 65.0 6.63e-01 86.8% 88.0%
143428 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 66.0 6.82e-01 86.8% 93.3%
4194202 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.79 70.0 7.14e-01 97.7% 96.0%
3015241 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 69.0 7.21e-01 98.4% 99.2%
3251045 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 66.0 6.20e-01 87.6% 77.3%
5039026 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 68.0 7.07e-01 100.0% 97.5%
3397928 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.79 70.0 7.12e-01 93.0% 99.2%
5977 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 69.0 7.18e-01 99.2% 99.2%
4934002 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 66.0 6.65e-01 87.6% 89.2%
4102438 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 69.0 7.18e-01 97.7% 99.2%
3387600 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 69.0 7.18e-01 100.0% 99.2%
3782606 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.79 71.0 6.84e-01 96.1% 93.8%
3804177 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.79 70.0 6.75e-01 94.6% 99.3%
2522057 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 69.0 7.11e-01 100.0% 97.6%
5027067 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 64.0 6.63e-01 85.3% 96.7%
1290662 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 65.0 6.25e-01 86.8% 84.6%
3624708 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 65.0 6.44e-01 87.6% 88.9%
4026069 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 64.0 6.35e-01 86.0% 89.6%
1013950 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.78 63.0 6.53e-01 84.5% 89.3%
4983064 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 65.0 6.61e-01 86.8% 94.4%
3015240 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.78 67.0 6.91e-01 97.7% 95.9%
4956740 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 65.0 6.62e-01 87.6% 95.2%
4860663 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.78 70.0 6.80e-01 100.0% 87.9%
5037314 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 63.0 6.55e-01 85.3% 94.2%
3785352 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.78 72.0 6.62e-01 100.0% 95.8%
4047098 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.78 68.0 7.06e-01 94.6% 99.2%
5011281 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 65.0 6.60e-01 87.6% 92.8%
4599875 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 67.0 6.93e-01 98.4% 98.3%
5978 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 67.0 6.91e-01 97.7% 95.9%
3963789 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 67.0 6.96e-01 97.7% 98.3%
4591776 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 70.0 7.02e-01 99.2% 95.4%
4976500 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 64.0 6.51e-01 87.6% 91.4%
4948360 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 63.0 6.37e-01 86.0% 88.4%
3281112 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 68.0 7.01e-01 96.9% 100.0%
4050655 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 68.0 6.83e-01 98.4% 93.1%
4608521 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.77 72.0 6.12e-01 100.0% 81.0%
144176 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 67.0 6.87e-01 97.7% 96.0%
4998585 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 64.0 6.60e-01 87.6% 95.0%
3722114 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.76 71.0 6.69e-01 100.0% 97.4%
4517015 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 63.0 6.48e-01 87.6% 93.5%
4083029 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 66.0 6.77e-01 96.9% 95.2%
4456195 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 63.0 6.53e-01 86.8% 95.8%
4943405 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 63.0 6.39e-01 86.8% 94.4%
3292092 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 66.0 6.54e-01 91.5% 94.8%
5010672 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 63.0 6.54e-01 87.6% 97.5%
4460660 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 71.0 7.01e-01 99.2% 96.3%
5037345 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 63.0 6.26e-01 87.6% 91.7%
309454 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 63.0 6.29e-01 87.6% 88.6%
4991675 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 63.0 6.43e-01 87.6% 94.4%
4315973 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.76 69.0 7.02e-01 98.4% 99.2%
4212381 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 63.0 6.25e-01 87.6% 88.1%
2588759 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 63.0 6.47e-01 86.8% 95.9%
5029787 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 63.0 6.57e-01 92.2% 95.0%
2878142 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 63.0 6.51e-01 92.2% 92.7%
5033948 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 65.0 6.49e-01 91.5% 90.0%
3719897 227.1.1.18 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.75 60.0 6.13e-01 83.7% 90.4%
2141304 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.75 67.0 6.73e-01 95.3% 97.7%
4069893 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.75 65.0 6.68e-01 100.0% 96.0%
3478161 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 70.0 6.91e-01 100.0% 99.3%
167574 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 62.0 6.21e-01 87.6% 87.8%
5028024 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 64.0 6.48e-01 91.5% 91.5%
3256904 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 66.0 6.72e-01 94.6% 99.2%
4941929 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 64.0 6.51e-01 91.5% 93.0%
5059299 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 64.0 6.64e-01 98.4% 98.3%
138072 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.74 65.0 6.49e-01 92.2% 92.4%
4463778 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.74 63.0 6.58e-01 97.7% 97.5%
5027066 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.74 65.0 6.61e-01 97.7% 97.6%
3597091 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.73 65.0 6.63e-01 100.0% 98.4%
4929645 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 63.0 6.45e-01 92.2% 95.2%
2096128 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.73 65.0 6.58e-01 97.7% 96.9%
5074320 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 66.0 6.62e-01 97.7% 99.2%
D2 high residues 140-244
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.73 66.0 6.51e-01 100.0% 93.8%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 64.0 5.95e-01 100.0% 89.3%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 64.0 5.41e-01 100.0% 62.2%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 63.0 5.93e-01 100.0% 85.2%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.70 63.0 6.08e-01 100.0% 89.1%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.68 60.0 5.82e-01 100.0% 89.2%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.64 56.0 4.37e-01 100.0% 45.3%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.60 32.0 3.41e-01 70.5% 56.8%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 32.0 3.88e-01 99.0% 93.1%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 35.0 4.06e-01 76.2% 90.5%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.89e-01 80.0% 41.9%
2k8qA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 3.21e-01 76.2% 53.7%
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.73e-01 78.1% 93.6%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995742 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 65.0 6.39e-01 100.0% 89.1%
3839477 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.74 67.0 6.31e-01 100.0% 88.8%
4995743 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.72 66.0 6.35e-01 100.0% 89.2%
4047098 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.72 65.0 6.27e-01 100.0% 91.7%
4194202 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.72 64.0 6.08e-01 100.0% 87.2%
144176 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.71 64.0 6.08e-01 100.0% 88.7%
3015240 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.71 63.0 6.05e-01 100.0% 88.5%
4315973 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.70 63.0 5.97e-01 100.0% 89.6%
4463778 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.69 62.0 5.94e-01 100.0% 90.0%
4591776 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.69 61.0 5.75e-01 100.0% 85.4%
4599875 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.66 59.0 5.67e-01 100.0% 88.3%
4232371 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.63 55.0 5.33e-01 100.0% 92.5%
3469917 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.61 37.0 3.94e-01 77.1% 67.4%
3885958 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.61 38.0 4.17e-01 74.3% 77.6%
4241499 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 43.0 4.42e-01 76.2% 98.1%
3411522 319.1.1.5 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.59 37.0 4.20e-01 75.2% 83.7%
3409499 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.58 36.0 3.88e-01 76.2% 74.1%
4968717 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.57 36.0 4.07e-01 79.0% 86.7%
4938286 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 37.0 3.67e-01 97.1% 63.5%
4952337 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 39.0 4.03e-01 85.7% 79.0%
2642013 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.53 39.0 2.61e-01 78.1% 76.3%
5028349 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 38.0 3.66e-01 87.6% 65.8%
3701705 319.1.1.5 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.52 38.0 3.92e-01 76.2% 89.0%
3932270 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.52 38.0 2.34e-01 79.0% 19.5%
3872745 319.1.1.5 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.52 38.0 3.82e-01 76.2% 84.8%
3267918 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 27.0 3.49e-01 70.5% 96.4%
3740923 4.1.1.107 beta barrels › SH3 › SH3 › SH3 › XRN1_D1 0.50 35.0 2.92e-01 70.5% 58.3%
D3 high residues 255-376
PDB
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.87 73.0 7.60e-01 89.3% 93.8%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.87 73.0 7.58e-01 89.3% 93.8%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 73.0 6.35e-01 91.0% 62.8%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 72.0 7.26e-01 90.2% 87.8%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 71.0 7.20e-01 91.0% 87.7%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 72.0 7.30e-01 91.0% 90.0%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 72.0 7.23e-01 92.6% 87.9%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.84 72.0 7.38e-01 91.8% 92.4%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 71.0 7.18e-01 91.0% 91.6%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 71.0 7.01e-01 91.0% 85.9%
1jqlA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 70.0 7.15e-01 91.8% 92.4%
4trtA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 71.0 7.16e-01 91.8% 93.3%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 70.0 5.38e-01 91.8% 45.9%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 69.0 6.72e-01 91.0% 90.1%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 72.0 5.99e-01 98.4% 75.9%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 72.0 6.03e-01 98.4% 75.6%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 62.0 6.36e-01 91.0% 88.2%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 68.0 6.42e-01 94.3% 88.7%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 72.0 5.45e-01 99.2% 81.7%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 70.0 5.47e-01 98.4% 81.7%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 69.0 5.33e-01 98.4% 80.8%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 69.0 5.33e-01 98.4% 80.3%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 69.0 5.28e-01 98.4% 81.3%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 65.0 5.09e-01 98.4% 80.7%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 66.0 5.00e-01 100.0% 81.4%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.67 60.0 4.55e-01 99.2% 81.2%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.59 41.0 4.39e-01 90.2% 83.5%
1ynjJ02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 31.0 3.99e-01 80.3% 96.8%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 33.0 3.76e-01 71.3% 83.9%
3t7aA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 34.0 2.87e-01 88.5% 40.6%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4876748 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.86 74.0 7.36e-01 91.0% 87.1%
3387600 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.86 72.0 7.31e-01 90.2% 89.2%
4102438 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.86 73.0 7.39e-01 90.2% 90.0%
3015241 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.85 72.0 7.30e-01 90.2% 89.9%
1871494 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.85 72.0 7.24e-01 90.2% 88.4%
4860663 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.85 74.0 7.03e-01 92.6% 79.3%
5977 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.85 71.0 7.24e-01 90.2% 89.2%
4500973 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.85 75.0 7.49e-01 91.8% 91.1%
4251800 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.84 73.0 7.15e-01 92.6% 84.6%
4542774 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.84 74.0 7.48e-01 91.8% 93.3%
4650779 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.84 74.0 7.36e-01 91.8% 89.6%
426904 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.84 71.0 7.16e-01 91.8% 88.6%
4315973 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 72.0 7.19e-01 90.2% 89.6%
4047098 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 72.0 7.30e-01 90.2% 91.7%
4162061 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.83 73.0 7.32e-01 91.8% 91.9%
2987540 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 72.0 7.06e-01 93.4% 85.4%
3351103 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 72.0 6.98e-01 91.8% 85.2%
2476832 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 72.0 6.97e-01 91.8% 86.7%
2878147 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.82 72.0 6.88e-01 91.8% 83.9%
5059299 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.82 69.0 6.98e-01 91.0% 90.0%
3725759 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.81 70.0 6.20e-01 91.8% 92.9%
2878142 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.80 69.0 6.89e-01 91.0% 89.4%
144176 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.80 69.0 6.92e-01 91.0% 89.5%
3015240 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.80 67.0 6.77e-01 90.2% 88.5%
3963789 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.80 68.0 6.94e-01 91.0% 91.7%
3685634 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.79 66.0 5.96e-01 87.7% 87.5%
3625037 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.79 69.0 6.65e-01 92.6% 94.1%
4194202 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.79 67.0 6.70e-01 91.0% 88.0%
3251867 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.79 69.0 6.73e-01 91.8% 90.8%
3244229 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.79 68.0 6.83e-01 91.8% 94.4%
3281112 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.79 66.0 6.65e-01 88.5% 89.2%
4083029 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.79 68.0 6.74e-01 91.8% 88.8%
3406312 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.78 68.0 6.84e-01 91.8% 94.3%
4336156 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.78 72.0 7.30e-01 97.5% 98.3%
2141304 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.78 68.0 6.64e-01 91.8% 92.4%
4463778 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.78 67.0 6.76e-01 91.8% 91.7%
3789625 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 68.0 6.61e-01 92.6% 94.1%
3558235 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.78 68.0 6.58e-01 91.8% 91.1%
4055466 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 68.0 6.77e-01 91.8% 92.7%
1549271 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.78 71.0 7.10e-01 97.5% 95.1%
4508401 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.78 72.0 7.17e-01 97.5% 95.2%
4069893 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 66.0 6.58e-01 91.0% 88.0%
3787700 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.77 67.0 6.18e-01 92.6% 96.8%
3596476 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.77 66.0 6.27e-01 91.8% 94.4%
1013950 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.77 69.0 6.94e-01 97.5% 95.1%
3081033 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.77 64.0 6.36e-01 87.7% 94.5%
3507499 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 67.0 6.44e-01 91.8% 94.8%
3932751 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 66.0 6.48e-01 91.8% 91.5%
3601847 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 67.0 6.61e-01 92.6% 93.0%
3436491 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 65.0 5.94e-01 91.8% 90.6%
3743106 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 68.0 6.34e-01 94.3% 95.2%
159555 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.75 67.0 6.62e-01 97.5% 91.3%
4426056 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.74 70.0 6.36e-01 100.0% 87.7%
3791518 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.72 63.0 6.43e-01 92.6% 94.2%
3719897 227.1.1.18 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.70 63.0 6.32e-01 97.5% 97.6%
1924009 227.1.1.10 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.67 56.0 5.50e-01 91.0% 88.0%
327025 6048.1.1.1 a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 0.56 40.0 4.22e-01 84.4% 84.0%
3588565 6048.1.1.1 a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 0.56 39.0 4.42e-01 91.0% 100.0%