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SRR1747026_scaffold_22_prodigal-single.1__X__X__00105
Bact-VirSRR1747026_scaffold_22_prodigal-single.1__X__X__00105
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 38-351
Domain cluster:
rep: pre4_saliva_scaffold_3_prodigal-single.1__X__X__00224__DFULL
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04055.28 best | Radical_SAM | 29.8 | 9.10e-07 | 59.9% | 77.1% |
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t7vA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.68 | 55.0 | 5.38e-01 | 95.2% | 77.2% |
| 3hv8A00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.66 | 44.0 | 4.94e-01 | 88.2% | 85.5% |
| 6pwkA02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.65 | 42.0 | 4.87e-01 | 86.3% | 87.0% |
| 4s3jB02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 42.0 | 4.55e-01 | 84.7% | 75.7% |
| 5xgbA03 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.63 | 43.0 | 4.82e-01 | 88.2% | 85.5% |
| 4f3hA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.63 | 43.0 | 4.77e-01 | 87.9% | 85.4% |
| 1gzjA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 46.0 | 4.66e-01 | 81.2% | 75.0% |
| 3sy8C02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.62 | 43.0 | 4.71e-01 | 88.5% | 85.3% |
| 2dy3C02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.61 | 39.0 | 4.63e-01 | 94.9% | 92.3% |
| 6hq7B02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.61 | 43.0 | 4.71e-01 | 88.5% | 85.8% |
| 3s83A00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.60 | 41.0 | 4.53e-01 | 92.0% | 84.0% |
| 4lj3A00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.60 | 42.0 | 4.57e-01 | 95.2% | 85.2% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 39.0 | 4.18e-01 | 100.0% | 76.0% |
| 6ktqA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 47.0 | 4.91e-01 | 99.7% | 94.0% |
| 3r89A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 45.0 | 4.68e-01 | 99.4% | 88.2% |
| 1d5cA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 28.0 | 3.87e-01 | 83.4% | 90.7% |
| 1uumA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 46.0 | 4.44e-01 | 83.8% | 88.0% |
| 4rshA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 32.0 | 4.13e-01 | 86.6% | 96.0% |
| 6jpkA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 33.0 | 3.52e-01 | 86.0% | 62.3% |
| 1c7nA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 31.0 | 3.62e-01 | 86.0% | 72.9% |
| 2q3fA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 30.0 | 3.94e-01 | 83.4% | 91.6% |
| 7exbA01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.55 | 45.0 | 4.74e-01 | 96.2% | 95.3% |
| 1z41A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 46.0 | 4.54e-01 | 88.9% | 87.5% |
| 7xg9A01 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.54 | 44.0 | 4.64e-01 | 95.2% | 93.7% |
| 3aptA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.53 | 45.0 | 4.73e-01 | 100.0% | 95.9% |
| 4k3zA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.53 | 46.0 | 4.63e-01 | 96.2% | 91.3% |
| 2clsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 30.0 | 3.87e-01 | 86.6% | 95.0% |
| 1dosA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 49.0 | 4.71e-01 | 100.0% | 86.9% |
| 3ianA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 46.0 | 4.66e-01 | 95.9% | 92.2% |
| 1bxbA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.52 | 46.0 | 4.27e-01 | 96.2% | 75.7% |
| 5tnvA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.52 | 44.0 | 4.53e-01 | 94.6% | 92.2% |
| 3vdhA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 46.0 | 4.49e-01 | 93.0% | 94.7% |
| 2xsaA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 41.0 | 4.40e-01 | 98.7% | 94.9% |
| 1jcjA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 38.0 | 4.19e-01 | 85.4% | 94.0% |
| 2aqwA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 45.0 | 4.47e-01 | 92.0% | 90.3% |
| 3cuxA01 | 3.20.20.360 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Malate synthase, domain 3 | 0.51 | 41.0 | 3.89e-01 | 92.0% | 70.3% |
| 2jepB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 47.0 | 4.48e-01 | 100.0% | 94.2% |
| 4bxoA01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 23.0 | 3.49e-01 | 98.7% | 100.0% |
| 4c6rA00 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.50 | 27.0 | 3.62e-01 | 87.3% | 98.1% |
| 2x0kA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 25.0 | 3.11e-01 | 96.8% | 74.7% |
| 5b3kA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.50 | 26.0 | 3.57e-01 | 87.6% | 99.3% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5073323 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 66.0 | 6.27e-01 | 100.0% | 73.8% |
| 5052299 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.79 | 71.0 | 6.70e-01 | 100.0% | 79.5% |
| 5017866 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.78 | 70.0 | 6.47e-01 | 100.0% | 76.6% |
| 4958342 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 69.0 | 6.51e-01 | 100.0% | 80.3% |
| 4556622 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.76 | 66.0 | 6.64e-01 | 100.0% | 89.2% |
| 5037814 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 70.0 | 6.44e-01 | 100.0% | 77.9% |
| 4992503 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 64.0 | 6.24e-01 | 100.0% | 81.8% |
| 4406456 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.75 | 66.0 | 6.60e-01 | 100.0% | 90.1% |
| 5042766 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.74 | 58.0 | 6.33e-01 | 100.0% | 96.9% |
| 5032526 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 64.0 | 6.36e-01 | 100.0% | 86.4% |
| 3952798 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.73 | 66.0 | 6.47e-01 | 100.0% | 86.8% |
| 4934106 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 67.0 | 6.59e-01 | 100.0% | 90.6% |
| 4941342 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 59.0 | 6.18e-01 | 93.0% | 90.5% |
| 4987225 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 66.0 | 6.31e-01 | 100.0% | 83.3% |
| 4436120 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.72 | 65.0 | 6.41e-01 | 100.0% | 89.1% |
| 4118176 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.72 | 67.0 | 6.53e-01 | 100.0% | 91.0% |
| 4958428 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 44.0 | 4.95e-01 | 100.0% | 77.2% |
| 5058371 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 57.0 | 6.05e-01 | 86.3% | 91.9% |
| 5062088 | 2002.1.1.449 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF3641 | 0.71 | 59.0 | 6.00e-01 | 100.0% | 87.1% |
| 4934129 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 64.0 | 6.16e-01 | 100.0% | 85.2% |
| 4200176 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.67 | 64.0 | 5.83e-01 | 100.0% | 83.3% |
| 5036135 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.66 | 53.0 | 5.29e-01 | 86.3% | 80.0% |
| 3966569 | 2002.5.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain | 0.63 | 43.0 | 4.85e-01 | 92.0% | 87.8% |
| 3972453 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.63 | 44.0 | 4.68e-01 | 91.7% | 78.8% |
| 2538881 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.63 | 42.0 | 4.76e-01 | 91.7% | 87.8% |
| 3280039 | 2002.5.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain | 0.62 | 43.0 | 3.87e-01 | 88.5% | 49.3% |
| 3510441 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.62 | 44.0 | 4.84e-01 | 88.2% | 86.9% |
| 3879317 | 2003.1.1.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ISPD_C | 0.61 | 29.0 | 4.08e-01 | 86.6% | 88.7% |
| 3283883 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.61 | 42.0 | 4.55e-01 | 88.5% | 80.4% |
| 5078065 | 2002.1.1.79 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF72 | 0.61 | 41.0 | 4.45e-01 | 82.5% | 80.2% |
| 2520636 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.61 | 43.0 | 4.68e-01 | 88.5% | 83.8% |
| 3038844 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.60 | 44.0 | 4.50e-01 | 93.9% | 75.2% |
| 3977807 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.60 | 31.0 | 3.95e-01 | 87.6% | 82.0% |
| 3290182 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.60 | 42.0 | 4.59e-01 | 88.5% | 83.0% |
| 3861541 | 2007.9.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 | 0.59 | 25.0 | 3.57e-01 | 83.4% | 82.1% |
| 5074841 | 2003.1.1.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CoA_binding_2 | 0.57 | 27.0 | 3.90e-01 | 86.3% | 94.5% |
| 3280948 | 2002.1.1.354 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF6986 | 0.56 | 46.0 | 4.28e-01 | 83.8% | 75.6% |
| 4972403 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.56 | 35.0 | 4.23e-01 | 87.6% | 91.9% |
| 4984480 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.56 | 48.0 | 5.02e-01 | 95.5% | 96.9% |
| 3675195 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.55 | 45.0 | 4.23e-01 | 84.1% | 83.4% |
| 4953174 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.55 | 44.0 | 4.49e-01 | 92.0% | 85.7% |
| 3934668 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.54 | 44.0 | 4.53e-01 | 84.4% | 91.3% |
| 4163747 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.54 | 31.0 | 3.91e-01 | 87.3% | 93.0% |
| 4971996 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.54 | 32.0 | 3.81e-01 | 84.1% | 85.2% |
| 3220592 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.53 | 26.0 | 3.49e-01 | 86.9% | 87.5% |
| 3976992 | 2002.1.1.300 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, C-C_Bond_Lyase | 0.52 | 42.0 | 4.37e-01 | 83.8% | 91.5% |
| 3624689 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.52 | 44.0 | 4.44e-01 | 96.2% | 89.0% |
| 3836787 | 2007.9.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR | 0.52 | 25.0 | 3.57e-01 | 87.3% | 96.6% |
| 3164257 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.52 | 42.0 | 4.39e-01 | 84.4% | 92.8% |
| 4658443 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.52 | 28.0 | 3.46e-01 | 83.8% | 82.1% |
| 3895050 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.52 | 27.0 | 3.54e-01 | 96.8% | 89.4% |
| 3404705 | 2002.1.1.45 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd | 0.51 | 41.0 | 3.96e-01 | 81.8% | 83.7% |
| 3195038 | 2003.1.1.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA | 0.51 | 32.0 | 3.87e-01 | 80.9% | 90.2% |
| 142869 | 2002.1.1.9 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase | 0.51 | 45.0 | 4.45e-01 | 92.0% | 90.1% |
| 3302396 | 2007.9.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR | 0.51 | 28.0 | 3.69e-01 | 87.3% | 96.5% |
| 4173724 | 2004.1.1.465 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MipZ, AAA_31 | 0.51 | 38.0 | 4.13e-01 | 90.8% | 90.2% |
D2
high
residues 366-458
Domain cluster:
rep: IMGVR_UViG_3300014914_000758-3300014914-Ga0164311_100018285__D345-426
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fzlA01 | 1.10.150.790 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.72 | 41.0 | 4.28e-01 | 95.7% | 60.9% |
| 6qdws00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.64 | 39.0 | 3.69e-01 | 94.6% | 53.2% |
| 1ax8A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.64 | 45.0 | 3.98e-01 | 91.4% | 52.3% |
| 2lsgA00 | 1.20.58.1280 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain | 0.63 | 42.0 | 4.23e-01 | 88.2% | 66.0% |
| 2ntxA02 | 1.20.58.1310 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 2 | 0.63 | 43.0 | 4.20e-01 | 87.1% | 64.1% |
| 4gytA00 | 1.20.120.740 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 | 0.62 | 46.0 | 3.74e-01 | 95.7% | 41.2% |
| 3qbrX00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.58 | 44.0 | 3.69e-01 | 94.6% | 46.6% |
| 1ho8A02 | 1.25.40.150 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › V-type ATPase, subunit H, C-terminal domain | 0.57 | 41.0 | 3.91e-01 | 84.9% | 62.5% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.57 | 45.0 | 3.95e-01 | 84.9% | 81.6% |
| 2l6jA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 44.0 | 4.13e-01 | 83.9% | 83.8% |
| 2e5vA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.56 | 38.0 | 3.76e-01 | 87.1% | 67.0% |
| 1sxjD03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.55 | 37.0 | 3.79e-01 | 83.9% | 70.3% |
| 2kiwA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.55 | 38.0 | 3.99e-01 | 97.8% | 79.1% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.54 | 39.0 | 3.68e-01 | 82.8% | 63.3% |
| 6wv5A01 | 1.20.1440.130 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain | 0.54 | 47.0 | 4.10e-01 | 92.5% | 98.5% |
| 4aqnA02 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.53 | 44.0 | 3.59e-01 | 94.6% | 96.4% |
| 4i1eA03 | 1.25.10.30 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain | 0.52 | 38.0 | 3.38e-01 | 77.4% | 59.7% |
| 2imsA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.51 | 45.0 | 3.70e-01 | 95.7% | 60.7% |
| 2juaA00 | 1.20.1480.30 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein | 0.50 | 42.0 | 4.15e-01 | 91.4% | 91.2% |
| 3x0uB01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.50 | 43.0 | 3.27e-01 | 97.8% | 76.1% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5019480 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.65 | 51.0 | 3.04e-01 | 84.9% | 78.6% |
| 3771739 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.64 | 48.0 | 2.96e-01 | 79.6% | 44.0% |
| 3239947 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.61 | 43.0 | 3.25e-01 | 73.1% | 96.0% |
| 3576168 | 109.4.1.390 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TH1 | 0.61 | 44.0 | 3.50e-01 | 89.2% | 35.6% |
| 3834324 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 41.0 | 2.70e-01 | 100.0% | 16.3% |
| 3965294 | 3558.1.1.0 ↗ | alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain | 0.58 | 43.0 | 4.27e-01 | 86.0% | 74.7% |
| 3490752 | 5054.1.1.17 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRAM_LAG1_CLN8 | 0.56 | 39.0 | 2.90e-01 | 73.1% | 29.2% |
| 5006721 | 547.1.1.9 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › DUF5658 | 0.55 | 43.0 | 4.01e-01 | 83.9% | 100.0% |
| 3576014 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 40.0 | 2.91e-01 | 82.8% | 28.1% |
| 4303951 | 601.54.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 | 0.54 | 46.0 | 4.11e-01 | 91.4% | 80.0% |
| 3941249 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 44.0 | 4.29e-01 | 87.1% | 86.0% |
| 3252622 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 42.0 | 4.26e-01 | 87.1% | 84.2% |
| 3992612 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.52 | 42.0 | 4.28e-01 | 86.0% | 87.8% |
| 4059065 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.52 | 44.0 | 4.36e-01 | 93.5% | 86.9% |
| 3558397 | 3919.1.1.3 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMMD8_HN | 0.52 | 46.0 | 4.58e-01 | 100.0% | 97.9% |
| 3897540 | 3919.1.1.3 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMMD8_HN | 0.51 | 45.0 | 4.53e-01 | 100.0% | 96.8% |
| 3938659 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.51 | 46.0 | 3.36e-01 | 100.0% | 60.0% |
| 3584357 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.51 | 45.0 | 3.42e-01 | 100.0% | 65.2% |
| 3917085 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 41.0 | 4.10e-01 | 87.1% | 85.3% |