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SRR1747026_scaffold_22_prodigal-single.1__X__X__00142

Bact-Vir

SRR1747026_scaffold_22_prodigal-single.1__X__X__00142

Identity

Kingdom:
phage

Quality

74.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-76
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.66 38.0 3.95e-01 83.3% 61.8%
4n01A01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.63 39.0 3.24e-01 100.0% 32.5%
1k25B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 49.0 3.19e-01 100.0% 70.1%
6zzmA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.57 42.0 2.88e-01 80.0% 89.0%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 2.99e-01 100.0% 58.8%
2g0qA01 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.51 38.0 3.17e-01 85.0% 71.3%
2y2mA03 3.40.50.12800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 35.0 3.38e-01 73.3% 86.8%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4463387 304.5.1.18 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › PrmA 0.66 47.0 3.84e-01 75.0% 100.0%
4985875 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 39.0 4.21e-01 71.7% 72.0%
3336992 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 35.0 2.87e-01 81.7% 28.7%
3676790 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.58 44.0 3.40e-01 85.0% 57.7%
3722420 2008.1.1.143 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.57 41.0 3.14e-01 81.7% 89.4%
3942812 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.56 40.0 2.77e-01 78.3% 79.1%
3388402 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 36.0 2.73e-01 83.3% 24.8%
3939681 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.53 42.0 2.80e-01 100.0% 58.2%
4803119 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.53 36.0 3.08e-01 73.3% 66.3%
3431681 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 44.0 4.10e-01 100.0% 93.6%
5040667 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.52 36.0 3.08e-01 73.3% 67.0%
4947809 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.51 41.0 2.80e-01 95.0% 49.8%
4669381 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.51 31.0 2.71e-01 78.3% 33.0%
4994964 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.50 41.0 2.81e-01 100.0% 89.8%
4064637 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 37.0 2.83e-01 80.0% 33.1%
4036154 3747.1.1.2 ↗ a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C 0.50 38.0 3.20e-01 83.3% 64.5%