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SRR1747026_scaffold_22_prodigal-single.1__X__X__00171

Bact-Vir

SRR1747026_scaffold_22_prodigal-single.1__X__X__00171

Identity

Kingdom:
phage

Quality

53.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 305-435
PDB
Domain cluster: rep: SRR1747055_scaffold_2_prodigal-single.1__X__X__00342__D202-325
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.76 68.0 7.05e-01 99.2% 99.2%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.64 44.0 5.11e-01 83.2% 97.9%
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.60 42.0 4.89e-01 81.7% 100.0%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.52 30.0 3.75e-01 98.5% 96.1%
5y20A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 19.0 2.81e-01 74.8% 78.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937267 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.84 74.0 7.78e-01 98.5% 100.0%
364260 70.4.1.3 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Peptidase_G2 0.72 68.0 6.25e-01 99.2% 99.4%
2808420 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.64 45.0 4.87e-01 83.2% 85.3%
5002644 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.59 34.0 4.42e-01 97.7% 100.0%