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SRR1747027_scaffold_2_prodigal-single.1__X__X__00010

Bact-Vir

SRR1747027_scaffold_2_prodigal-single.1__X__X__00010

Identity

Kingdom:
phage

Quality

90.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-195
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01510.31 best Amidase_2 43.3 6.30e-11 79.3% 90.7%
D2 high residues 225-279
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qjfB01 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.67 40.0 4.05e-01 89.1% 61.1%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.61 42.0 4.15e-01 70.9% 67.2%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 41.0 4.05e-01 70.9% 82.8%
2l37A00 6.10.250.890 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 40.0 4.45e-01 70.9% 90.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3746144 192.29.1.273 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › NICE-3 0.70 54.0 5.16e-01 83.6% 100.0%
4142579 3718.1.1.26 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › RICH 0.53 46.0 3.72e-01 94.5% 71.0%
3939938 103.4.1.1 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX 0.53 48.0 4.12e-01 100.0% 87.1%
None 0.52 43.0 2.62e-01 92.7% 94.3%