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SRR1747027_scaffold_2_prodigal-single.1__X__X__00032
Bact-VirSRR1747027_scaffold_2_prodigal-single.1__X__X__00032
Identity
- Kingdom:
- phage
Quality
74.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 140-217
Domain cluster:
representative
D2
medium
residues 271-351
Domain cluster:
rep: SRR1747021_scaffold_4_curated_closed_complete_prodigal-single.1__X__X__00243__D135-214
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c26A00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.64 | 43.0 | 4.65e-01 | 84.0% | 84.8% |
| 5yrzB00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.64 | 43.0 | 4.83e-01 | 84.0% | 98.3% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.64 | 47.0 | 4.36e-01 | 79.0% | 85.7% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.61 | 45.0 | 3.76e-01 | 80.2% | 94.8% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.61 | 43.0 | 3.79e-01 | 72.8% | 89.9% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 41.0 | 3.30e-01 | 71.6% | 48.5% |
| 2h7fX02 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.59 | 53.0 | 3.75e-01 | 98.8% | 39.0% |
| 2wb6A00 | 3.90.1150.90 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.59 | 46.0 | 4.13e-01 | 84.0% | 79.8% |
| 1jqlA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.58 | 43.0 | 3.83e-01 | 79.0% | 90.8% |
| 4bv4R00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.58 | 42.0 | 2.67e-01 | 77.8% | 21.6% |
| 4r7rA00 | 3.30.1490.410 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 | 0.57 | 43.0 | 3.69e-01 | 79.0% | 78.7% |
| 1r9cA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 40.0 | 3.57e-01 | 77.8% | 83.2% |
| 2a9sB00 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.55 | 46.0 | 3.81e-01 | 100.0% | 88.5% |
| 3ezhA00 | 1.20.120.960 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase NarX, sensor domain | 0.54 | 47.0 | 4.25e-01 | 100.0% | 86.0% |
| 1iwlA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 39.0 | 3.09e-01 | 96.3% | 35.0% |
| 4ddpA00 | 1.10.418.40 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 | 0.54 | 46.0 | 3.59e-01 | 100.0% | 89.7% |
| 1vwxH02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.54 | 42.0 | 3.89e-01 | 84.0% | 75.7% |
| 2dsyD00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 37.0 | 3.74e-01 | 100.0% | 71.6% |
| 7uhyA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 37.0 | 2.57e-01 | 72.8% | 51.6% |
| 3wpwA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.54 | 45.0 | 3.83e-01 | 98.8% | 94.6% |
| 4c0dC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.54 | 44.0 | 3.70e-01 | 93.8% | 52.1% |
| 7lgjA01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.53 | 44.0 | 3.34e-01 | 98.8% | 42.9% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.53 | 47.0 | 4.58e-01 | 100.0% | 93.2% |
| 4b1bA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 45.0 | 2.89e-01 | 98.8% | 28.8% |
| 1w78A01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.52 | 45.0 | 3.11e-01 | 97.5% | 80.1% |
| 2y23A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.29e-01 | 93.8% | 55.8% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 43.0 | 4.20e-01 | 100.0% | 90.4% |
| 2k3dA00 | 3.10.450.130 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains | 0.51 | 37.0 | 3.63e-01 | 77.8% | 78.2% |
| 4qd4A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 44.0 | 2.91e-01 | 98.8% | 22.4% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4484131 | 4161.1.1.0 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like | 0.67 | 46.0 | 3.19e-01 | 72.8% | 40.4% |
| 4967355 | 4100.1.1.3 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox | 0.66 | 37.0 | 4.04e-01 | 100.0% | 67.7% |
| 5027607 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.63 | 46.0 | 4.75e-01 | 87.7% | 84.0% |
| 3274168 | 243.6.1.11 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PF31203 | 0.63 | 36.0 | 3.90e-01 | 97.5% | 67.7% |
| 4929483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.59 | 46.0 | 4.13e-01 | 98.8% | 58.3% |
| 4946190 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 46.0 | 4.26e-01 | 88.9% | 100.0% |
| 3174978 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.56 | 47.0 | 3.56e-01 | 93.8% | 57.1% |
| 3242274 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.55 | 39.0 | 4.01e-01 | 76.5% | 78.7% |
| 5009633 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 37.0 | 3.65e-01 | 70.4% | 76.7% |
| 3613468 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 39.0 | 4.22e-01 | 95.1% | 95.4% |
| 4927204 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 35.0 | 3.44e-01 | 100.0% | 60.0% |
| 3712990 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 38.0 | 4.01e-01 | 93.8% | 85.7% |
| 3605916 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 44.0 | 3.98e-01 | 97.5% | 74.8% |
| 3260517 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 38.0 | 3.38e-01 | 76.5% | 93.3% |
| 3214098 | 330.1.1.24 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C | 0.52 | 44.0 | 4.05e-01 | 98.8% | 83.2% |
| 3254221 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 35.0 | 2.30e-01 | 71.6% | 33.2% |
| 3250994 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 35.0 | 3.86e-01 | 95.1% | 89.2% |
| 3485027 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 42.0 | 2.66e-01 | 95.1% | 97.8% |
| 4928516 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 35.0 | 3.13e-01 | 71.6% | 50.8% |
| 4943309 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 35.0 | 3.22e-01 | 72.8% | 80.7% |
| 5048715 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 35.0 | 2.99e-01 | 97.5% | 41.4% |
| 3994195 | 2485.1.1.35 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 | 0.51 | 40.0 | 3.92e-01 | 92.6% | 95.8% |
| 5079402 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 35.0 | 3.04e-01 | 71.6% | 44.6% |
| 4929825 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 34.0 | 3.10e-01 | 71.6% | 49.6% |
| 5071935 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 43.0 | 3.75e-01 | 98.8% | 96.2% |
| 5069328 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.50 | 35.0 | 3.16e-01 | 96.3% | 51.3% |
| 3949336 | 220.1.1.216 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N | 0.50 | 34.0 | 3.11e-01 | 70.4% | 61.8% |