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SRR1747027_scaffold_2_prodigal-single.1__X__X__00217

Bact-Vir

SRR1747027_scaffold_2_prodigal-single.1__X__X__00217

Identity

Kingdom:
phage

Quality

82.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-104
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.75 52.0 4.36e-01 73.2% 89.4%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.72 57.0 4.90e-01 92.9% 54.5%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.71 62.0 3.91e-01 100.0% 49.3%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.70 57.0 3.61e-01 89.3% 22.8%
3d5pA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.69 55.0 4.10e-01 92.9% 36.1%
4b9dB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 49.0 4.10e-01 75.0% 88.2%
1boxA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.68 51.0 4.28e-01 80.4% 61.1%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.68 59.0 3.64e-01 96.4% 30.9%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 57.0 3.55e-01 96.4% 34.1%
4j0xA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 58.0 3.52e-01 100.0% 42.2%
3s2kB01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.66 56.0 3.53e-01 96.4% 44.3%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.65 55.0 3.48e-01 98.2% 24.6%
1rwiA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 56.0 3.64e-01 98.2% 43.4%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 55.0 3.57e-01 98.2% 49.4%
4btfA03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 52.0 4.08e-01 87.5% 76.8%
3ffvA00 3.40.1580.20 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Syd protein 0.64 49.0 3.44e-01 94.6% 26.0%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 53.0 3.38e-01 100.0% 44.6%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 55.0 3.22e-01 96.4% 29.9%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 55.0 3.35e-01 100.0% 41.4%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 43.0 3.37e-01 71.4% 78.9%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 47.0 4.10e-01 83.9% 71.1%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 46.0 4.03e-01 82.1% 95.5%
3wy2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 45.0 4.18e-01 80.4% 100.0%
2z1kA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 46.0 4.07e-01 82.1% 95.3%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.14e-01 98.2% 39.8%
2wc7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 46.0 4.13e-01 82.1% 96.2%
8djfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 51.0 3.31e-01 98.2% 42.1%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 45.0 3.73e-01 80.4% 86.3%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.01e-01 92.9% 91.7%
4xb3A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 44.0 4.07e-01 78.6% 100.0%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 44.0 2.87e-01 78.6% 36.7%
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 47.0 4.05e-01 87.5% 100.0%
1afcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 40.0 3.18e-01 71.4% 64.6%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 48.0 4.09e-01 91.1% 98.9%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 46.0 3.39e-01 87.5% 68.2%
1vw5A00 3.30.70.1420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1 0.57 41.0 3.12e-01 78.6% 95.4%
3jr1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 46.0 3.90e-01 91.1% 99.0%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.57 44.0 3.54e-01 85.7% 44.0%
3vm7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 42.0 3.54e-01 80.4% 87.8%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.57 45.0 4.23e-01 91.1% 88.7%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.57 45.0 3.27e-01 89.3% 97.6%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 42.0 3.65e-01 83.9% 93.6%
4govA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 40.0 3.13e-01 92.9% 33.6%
3zypA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.14e-01 100.0% 73.7%
3q7yA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 39.0 3.15e-01 82.1% 66.1%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 38.0 3.46e-01 78.6% 100.0%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 41.0 3.26e-01 85.7% 94.1%
5g56A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 38.0 3.15e-01 85.7% 66.9%
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.32e-01 85.7% 84.3%
2nn6D00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 38.0 2.70e-01 83.9% 44.4%
2mizA00 2.60.40.2900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.11e-01 96.4% 44.9%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3447653 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.76 62.0 3.84e-01 96.4% 16.4%
4930465 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.74 63.0 6.16e-01 92.9% 98.3%
3644145 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.74 65.0 3.98e-01 98.2% 25.1%
3212280 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 64.0 3.82e-01 100.0% 38.5%
3676177 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.72 62.0 3.87e-01 96.4% 18.6%
3466402 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.72 65.0 4.21e-01 100.0% 44.7%
3419181 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.72 63.0 3.91e-01 98.2% 18.3%
3464286 5.1.5.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF295 0.71 62.0 3.86e-01 96.4% 48.3%
3428912 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.70 63.0 3.82e-01 98.2% 41.7%
3367314 5.1.4.510 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_1 0.70 63.0 3.93e-01 98.2% 31.6%
3641403 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.70 60.0 3.87e-01 96.4% 26.5%
3823559 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.69 61.0 3.81e-01 98.2% 44.8%
3343802 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.69 60.0 3.67e-01 100.0% 40.5%
3432908 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.69 60.0 3.71e-01 100.0% 40.3%
3465957 5.1.4.504 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › b-prop_At3g26010-like 0.69 61.0 3.64e-01 100.0% 49.6%
4934826 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 59.0 3.68e-01 96.4% 29.5%
3647885 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.68 59.0 3.65e-01 96.4% 26.3%
5040009 5.1.3.22 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.68 59.0 3.59e-01 96.4% 35.9%
3459218 5.1.3.159 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.68 59.0 3.61e-01 100.0% 41.4%
3648232 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 60.0 3.65e-01 98.2% 44.4%
5004871 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.68 54.0 4.62e-01 87.5% 56.7%
3336515 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.68 59.0 3.66e-01 98.2% 43.5%
3999169 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.68 59.0 3.61e-01 98.2% 41.2%
3801008 5.1.4.420 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Aladin 0.67 56.0 3.34e-01 94.6% 25.6%
3423257 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.67 59.0 3.55e-01 96.4% 43.3%
5017944 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 57.0 3.60e-01 100.0% 40.0%
3518523 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 58.0 3.68e-01 98.2% 30.5%
3781083 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.67 58.0 3.40e-01 100.0% 34.3%
3647333 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.66 57.0 4.68e-01 94.6% 55.0%
3460976 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.66 60.0 3.64e-01 100.0% 36.7%
3831707 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.66 59.0 3.58e-01 100.0% 29.6%
3962065 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 57.0 3.71e-01 98.2% 47.6%
3802472 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.66 57.0 3.60e-01 100.0% 29.8%
None 0.65 55.0 4.32e-01 96.4% 66.4%
4946341 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.65 46.0 3.07e-01 85.7% 17.6%
3832313 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.65 57.0 3.52e-01 98.2% 24.3%
3992505 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.65 48.0 3.16e-01 91.1% 17.6%
3769881 5.1.3.145 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b, DUF5050 0.65 56.0 3.54e-01 98.2% 31.0%
3495285 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.65 51.0 3.76e-01 87.5% 33.3%
3523834 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.64 56.0 3.41e-01 98.2% 58.1%
3574500 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 55.0 3.25e-01 100.0% 30.8%
3168452 331.10.2.3 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 0.64 51.0 4.21e-01 89.3% 50.5%
3245227 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.64 55.0 3.49e-01 100.0% 47.3%
3717755 5.1.3.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.64 55.0 3.72e-01 100.0% 62.7%
4502670 2.1.1.177 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 0.64 48.0 3.24e-01 80.4% 31.7%
3458155 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.63 54.0 3.43e-01 100.0% 42.3%
3394752 5.1.5.41 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_2 0.62 53.0 3.28e-01 100.0% 43.3%
3452110 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.62 51.0 4.35e-01 92.9% 68.4%
3820070 5.1.2.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › FBA_1 0.62 51.0 3.41e-01 92.9% 23.6%
3958592 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.62 50.0 3.12e-01 91.1% 31.2%
3903931 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.61 52.0 3.30e-01 98.2% 22.9%
None 0.61 51.0 3.19e-01 94.6% 28.9%
3812754 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.61 53.0 3.51e-01 98.2% 28.3%
1117317 3417.1.1.1 a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS 0.61 44.0 4.30e-01 83.9% 69.8%
3199320 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 48.0 3.83e-01 87.5% 51.3%
3730875 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.61 39.0 3.30e-01 73.2% 37.9%
4013580 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.61 50.0 4.13e-01 96.4% 74.5%
2581425 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 42.0 4.24e-01 73.2% 81.8%
5048945 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 49.0 3.87e-01 92.9% 50.4%
3476139 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 51.0 4.11e-01 98.2% 86.1%
3533183 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.60 49.0 4.11e-01 92.9% 85.0%
3591146 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.59 45.0 2.91e-01 87.5% 78.6%
4122018 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.57 46.0 3.94e-01 94.6% 54.0%
3223396 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.75e-01 92.9% 87.0%
4017263 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 39.0 3.31e-01 73.2% 62.1%
3972677 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 45.0 2.96e-01 92.9% 45.3%
3535499 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 39.0 3.25e-01 91.1% 80.0%