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SRR1747027_scaffold_2_prodigal-single.1__X__X__00244

Bact-Vir

SRR1747027_scaffold_2_prodigal-single.1__X__X__00244

Identity

Kingdom:
phage

Quality

48.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-114_340-353
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d73A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.69 48.0 4.85e-01 93.0% 71.7%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.63 44.0 3.59e-01 96.5% 40.0%
1yllA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 43.0 4.75e-01 94.7% 88.0%
1wltA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 39.0 3.43e-01 93.9% 42.0%
6mfaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 34.0 3.89e-01 83.3% 74.7%
5buvB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 39.0 3.42e-01 93.9% 42.8%
3rnsA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 40.0 4.10e-01 96.5% 71.3%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 41.0 3.99e-01 97.4% 64.3%
1oi6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 38.0 3.17e-01 95.6% 36.6%
2pytA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 38.0 3.69e-01 95.6% 58.6%
1y3tA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 40.0 3.49e-01 93.9% 47.1%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 39.0 3.97e-01 93.0% 70.6%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 38.0 4.01e-01 93.9% 76.8%
2pfwA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 38.0 3.91e-01 94.7% 70.3%
1yhfA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 38.0 3.93e-01 94.7% 71.8%
3es4A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 38.0 3.81e-01 96.5% 67.2%
1jz7A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 4.08e-01 87.7% 77.4%
5j7mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 39.0 3.89e-01 93.9% 68.0%
5fq0A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 39.0 3.97e-01 94.7% 73.6%
1ohfA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.61e-01 95.6% 93.6%
4b29A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 39.0 3.25e-01 94.7% 42.1%
2qjvA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 4.11e-01 93.0% 77.0%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 38.0 3.85e-01 96.5% 70.4%
3cewA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 37.0 3.81e-01 93.0% 71.8%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 4.65e-01 90.4% 96.1%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 41.0 3.63e-01 95.6% 55.0%
4ca9A00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.53 40.0 4.32e-01 94.7% 93.9%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 34.0 3.73e-01 92.1% 83.7%
3gbwA00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.53 42.0 3.76e-01 93.9% 60.2%
1g0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 4.35e-01 88.6% 88.2%
3s7vC00 2.60.175.10 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus 0.53 45.0 3.46e-01 93.9% 95.9%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.96e-01 95.6% 94.4%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.50e-01 95.6% 66.8%
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 3.25e-01 92.1% 50.9%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 4.08e-01 90.4% 91.3%
1gqgC01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 37.0 3.48e-01 94.7% 60.0%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 3.66e-01 93.9% 63.2%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.52 45.0 4.21e-01 95.6% 97.9%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.52 46.0 4.27e-01 98.2% 91.7%
1kv3A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 4.32e-01 89.5% 87.2%
4p02B03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 43.0 4.05e-01 91.2% 95.8%
2gu9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 40.0 4.20e-01 94.7% 91.3%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.97e-01 90.4% 90.1%
1upsB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.35e-01 93.0% 73.6%
7t7zA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 42.0 3.86e-01 92.1% 68.2%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.85e-01 93.0% 94.0%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.51 43.0 4.35e-01 92.1% 100.0%
4brvA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.51 38.0 3.72e-01 90.4% 73.4%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 4.00e-01 93.9% 77.6%
1uijB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 39.0 3.50e-01 95.6% 57.6%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 4.12e-01 93.0% 96.9%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.50 40.0 3.20e-01 86.0% 56.6%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952405 10.1.2.194 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › Lectin_like 0.63 42.0 4.58e-01 89.5% 82.1%
1674686 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.62 40.0 3.51e-01 94.7% 43.6%
3591997 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 44.0 4.21e-01 93.9% 66.9%
4984169 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 38.0 4.31e-01 95.6% 87.1%
4027528 929.1.1.0 beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.59 43.0 4.73e-01 93.0% 95.6%
3978761 10.32.1.239 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FNIII-A_GpJ 0.59 49.0 4.83e-01 92.1% 97.6%
5035505 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 50.0 5.03e-01 92.1% 94.8%
4990903 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.57 38.0 4.02e-01 93.9% 75.0%
4600171 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.57 47.0 4.95e-01 97.4% 96.2%
4242187 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.57 50.0 5.03e-01 94.7% 99.1%
4981984 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 37.0 3.99e-01 84.2% 76.0%
3232754 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 38.0 3.75e-01 85.1% 63.2%
3611129 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.56 41.0 4.18e-01 93.0% 78.2%
3484264 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 32.0 3.71e-01 71.9% 78.8%
3945527 10.32.1.239 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FNIII-A_GpJ 0.56 47.0 4.45e-01 91.2% 97.0%
4970162 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 42.0 3.68e-01 93.0% 53.3%
5053030 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.56 38.0 4.45e-01 91.2% 100.0%
5034749 10.1.2.194 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › Lectin_like 0.56 41.0 3.63e-01 93.0% 51.8%
4623622 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.56 44.0 4.76e-01 94.7% 100.0%
3893718 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.56 47.0 4.26e-01 92.1% 100.0%
4103741 10.32.1.19 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.55 45.0 4.66e-01 88.6% 100.0%
3192812 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 45.0 3.77e-01 89.5% 73.0%
4930609 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 47.0 4.46e-01 95.6% 86.4%
5030450 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 44.0 4.12e-01 88.6% 80.7%
4974487 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 41.0 3.65e-01 93.9% 54.7%
3275901 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.54 48.0 4.81e-01 94.7% 97.4%
4982351 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.54 47.0 4.66e-01 94.7% 99.2%
3473996 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.54 48.0 3.63e-01 100.0% 93.2%
5018134 10.1.2.186 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › DUF3344 0.54 47.0 4.45e-01 95.6% 94.1%
4935032 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 47.0 4.84e-01 97.4% 100.0%
5046630 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 45.0 4.57e-01 93.0% 90.4%
2523954 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.53 46.0 4.14e-01 93.0% 94.9%
5022099 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 4.21e-01 92.1% 85.5%
3993913 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 44.0 4.11e-01 88.6% 82.9%
5033996 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 43.0 3.45e-01 90.4% 99.6%
3928463 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 45.0 4.65e-01 90.4% 99.0%
5001041 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 43.0 4.35e-01 86.8% 97.3%
3580950 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 45.0 3.44e-01 93.0% 95.6%
3222092 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.66e-01 96.5% 67.2%
3241410 10.32.1.218 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.53 44.0 4.50e-01 90.4% 100.0%
5013259 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 44.0 4.29e-01 90.4% 82.4%
3928254 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 44.0 4.44e-01 91.2% 100.0%
3218244 11.1.4.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.52 37.0 3.64e-01 83.3% 68.3%
5046609 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 42.0 4.43e-01 89.5% 94.3%
3221888 10.32.1.218 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.52 45.0 4.39e-01 93.0% 95.1%
3591145 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 45.0 4.62e-01 93.9% 98.2%
4959655 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.52 39.0 4.06e-01 90.4% 86.7%
4985871 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 43.0 4.44e-01 87.7% 100.0%
5063640 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 39.0 4.30e-01 86.0% 98.9%
3658630 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 41.0 4.17e-01 84.2% 87.6%
5034488 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 43.0 4.06e-01 88.6% 100.0%
3908890 10.1.1.5 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.52 44.0 3.63e-01 94.7% 93.0%
3225599 10.32.1.218 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.52 45.0 3.56e-01 93.0% 51.4%
3057120 10.32.1.31 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.51 43.0 3.58e-01 90.4% 70.7%
3275875 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 37.0 3.89e-01 93.0% 82.9%
3609844 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.98e-01 92.1% 92.7%
3200725 10.32.1.252 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7371 0.51 41.0 3.39e-01 86.8% 55.9%
3246038 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.51 42.0 3.89e-01 91.2% 83.8%
3241382 10.40.1.1 beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR 0.51 39.0 3.53e-01 92.1% 58.2%
4979750 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.97e-01 92.1% 92.4%
3749319 10.21.1.1 beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.50 45.0 4.18e-01 95.6% 84.3%
3911272 10.32.1.103 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF5918 0.50 42.0 3.56e-01 92.1% 59.0%
5018082 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.87e-01 81.6% 93.9%
D2 medium residues 170-225_243-253
PDB