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SRR1747030_scaffold_3_prodigal-single.1__X__X__00022

Bact-Vir

SRR1747030_scaffold_3_prodigal-single.1__X__X__00022

Identity

Kingdom:
phage

Quality

85.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-97
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 23.0 3.39e-01 98.9% 100.0%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 39.0 3.41e-01 94.7% 53.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 30.0 3.38e-01 77.7% 72.3%
3927303 7516.1.1.69 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_92 0.53 47.0 3.06e-01 98.9% 90.8%
3874660 2.1.1.131 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_C 0.53 46.0 3.76e-01 100.0% 84.9%
3562527 386.1.1.358 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451 0.51 31.0 3.69e-01 97.9% 93.3%
None — 0.51 30.0 3.67e-01 97.9% 93.3%
5006201 2004.1.1.220 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.50 39.0 3.05e-01 86.2% 89.3%