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SRR1747030_scaffold_3_prodigal-single.1__X__X__00032
Bact-VirSRR1747030_scaffold_3_prodigal-single.1__X__X__00032
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-78
Domain cluster:
rep: IMGVR_UViG_3300001482_000079-3300001482-rank07_1021351939__D9-76
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.70 | 34.0 | 3.70e-01 | 100.0% | 53.8% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 55.0 | 5.17e-01 | 100.0% | 72.0% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.63 | 35.0 | 3.57e-01 | 75.3% | 53.2% |
| 3ke6B01 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 51.0 | 3.79e-01 | 98.7% | 77.8% |
| 2pgeA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.59 | 50.0 | 4.35e-01 | 98.7% | 74.8% |
| 3a2eA00 | 3.30.430.20 | Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif | 0.56 | 44.0 | 4.03e-01 | 98.7% | 63.9% |
| 1p1lA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 41.0 | 3.73e-01 | 80.5% | 81.4% |
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.54 | 32.0 | 3.36e-01 | 74.0% | 63.4% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.53 | 36.0 | 3.70e-01 | 70.1% | 76.0% |
| 6pfzD02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 43.0 | 3.00e-01 | 89.6% | 37.4% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 36.0 | 3.67e-01 | 94.8% | 74.3% |
| 6zj8D01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 28.0 | 2.51e-01 | 100.0% | 34.2% |
| 3cawA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 36.0 | 3.46e-01 | 80.5% | 60.4% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.69e-01 | 81.8% | 88.8% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 42.0 | 3.03e-01 | 94.8% | 95.5% |
| 3fmcC01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 41.0 | 2.91e-01 | 94.8% | 94.1% |
| 4f0jA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 41.0 | 2.82e-01 | 94.8% | 85.9% |
| 3dmgA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 43.0 | 3.32e-01 | 100.0% | 47.9% |
| 4rgyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 40.0 | 3.00e-01 | 94.8% | 88.6% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1141934 | 3162.1.1.1 ↗ | a+b two layers › a functionally unknown protein from Leptospirillum sp. Group II UBA › a functionally unknown protein from Leptospirillum sp. Group II UBA › a functionally unknown protein from Leptospirillum sp. Group II UBA › DUF6840 | 0.68 | 54.0 | 5.07e-01 | 100.0% | 69.8% |
| 4987322 | 230.1.1.0 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like | 0.67 | 58.0 | 5.40e-01 | 100.0% | 84.0% |
| 3598156 | 230.4.1.0 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like | 0.66 | 58.0 | 4.36e-01 | 100.0% | 92.8% |
| 4961941 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 54.0 | 3.45e-01 | 93.5% | 60.2% |
| 5056456 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.62 | 54.0 | 5.11e-01 | 100.0% | 87.4% |
| 4029236 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.61 | 42.0 | 3.23e-01 | 70.1% | 38.8% |
| 3800070 | 210.2.1.0 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain | 0.60 | 51.0 | 3.37e-01 | 100.0% | 55.0% |
| None | — | 0.58 | 39.0 | 2.64e-01 | 70.1% | 41.0% | |
| 3927556 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.56 | 38.0 | 2.56e-01 | 92.2% | 17.0% |
| 4181312 | 231.1.2.3 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › CbiZ | 0.55 | 38.0 | 2.74e-01 | 74.0% | 31.4% |
| 3510355 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.55 | 44.0 | 3.81e-01 | 96.1% | 56.7% |
| 3683817 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.54 | 44.0 | 3.01e-01 | 94.8% | 86.6% |
| 3412116 | 206.1.1.88 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL, DUF1679 | 0.54 | 40.0 | 2.56e-01 | 79.2% | 52.8% |
| 3461653 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 40.0 | 2.60e-01 | 80.5% | 54.3% |
| 3823173 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.53 | 41.0 | 3.70e-01 | 97.4% | 59.1% |
| 3606650 | 6132.1.1.0 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain | 0.53 | 37.0 | 3.34e-01 | 71.4% | 54.3% |
| 3354935 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.53 | 42.0 | 3.90e-01 | 98.7% | 66.7% |
| 4055336 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.52 | 44.0 | 3.28e-01 | 100.0% | 44.5% |
| 4223710 | 3054.1.1.0 ↗ | alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol | 0.51 | 43.0 | 3.87e-01 | 94.8% | 92.7% |
| 3467313 | 206.1.1.26 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Act-Frag_cataly | 0.51 | 35.0 | 2.32e-01 | 71.4% | 61.7% |
| 3219378 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 40.0 | 3.56e-01 | 88.3% | 96.7% |
| 3449886 | 2011.1.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 | 0.51 | 41.0 | 2.78e-01 | 92.2% | 33.4% |
| 4997778 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 39.0 | 3.30e-01 | 88.3% | 82.8% |
| 3919308 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.51 | 44.0 | 2.82e-01 | 98.7% | 55.7% |
| 3673015 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.50 | 37.0 | 2.83e-01 | 79.2% | 93.8% |
| 3562501 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.50 | 32.0 | 3.23e-01 | 70.1% | 62.5% |
| 4027407 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 40.0 | 2.56e-01 | 89.6% | 57.9% |