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SRR1747030_scaffold_3_prodigal-single.1__X__X__00049

Bact-Vir

SRR1747030_scaffold_3_prodigal-single.1__X__X__00049

Identity

Kingdom:
phage

Quality

92.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-123
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.60 29.0 3.84e-01 79.7% 88.5%
3zh5A00 2.40.128.710 Mainly Beta › Beta Barrel › Lipocalin › Surface-adhesin protein E 0.58 40.0 3.87e-01 93.2% 62.9%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.58 34.0 3.34e-01 85.6% 54.0%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 35.0 3.57e-01 79.7% 62.8%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.56 30.0 3.26e-01 88.1% 58.8%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 34.0 3.59e-01 78.8% 66.7%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 40.0 3.51e-01 78.8% 93.2%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.67e-01 79.7% 73.0%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 33.0 3.53e-01 90.7% 74.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3278990 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.60 38.0 3.43e-01 98.3% 47.5%
3616890 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.57 34.0 3.47e-01 78.8% 59.1%
5083024 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 34.0 2.36e-01 98.3% 16.0%
417659 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.53 40.0 3.46e-01 78.8% 92.2%
4027531 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 39.0 2.66e-01 83.1% 41.4%
4122961 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.50 33.0 3.58e-01 92.4% 79.0%