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SRR1747030_scaffold_3_prodigal-single.1__X__X__00068
Bact-VirSRR1747030_scaffold_3_prodigal-single.1__X__X__00068
Identity
- Kingdom:
- phage
Quality
77.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-85
Domain cluster:
rep: OX241455.1__CAH9013991.1__VP501E541_P0146__00146__D3-81
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.66 | 45.0 | 4.94e-01 | 96.4% | 90.9% |
| 3rkgA01 | 2.40.128.330 | Mainly Beta › Beta Barrel › Lipocalin › | 0.65 | 50.0 | 4.87e-01 | 82.1% | 85.1% |
| 2oviA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.60 | 53.0 | 4.38e-01 | 100.0% | 65.2% |
| 5exvC00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.59 | 52.0 | 4.19e-01 | 100.0% | 59.4% |
| 2hqvA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.59 | 51.0 | 4.13e-01 | 100.0% | 56.4% |
| 2cy5A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 49.0 | 4.30e-01 | 94.0% | 83.7% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.58 | 50.0 | 4.09e-01 | 96.4% | 91.0% |
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 36.0 | 3.50e-01 | 91.7% | 55.8% |
| 3caxA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 41.0 | 3.47e-01 | 77.4% | 69.6% |
| 2vouA02 | 3.30.9.60 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.56 | 40.0 | 3.37e-01 | 76.2% | 81.6% |
| 6dgiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.55 | 38.0 | 4.10e-01 | 100.0% | 89.7% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 39.0 | 4.14e-01 | 97.6% | 91.7% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 46.0 | 4.13e-01 | 100.0% | 83.1% |
| 3klqA01 | 2.60.40.3050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 35.0 | 3.14e-01 | 88.1% | 47.9% |
| 1vf7F01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.52 | 47.0 | 4.40e-01 | 100.0% | 99.0% |
| 2ekjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.62e-01 | 98.8% | 64.8% |
| 3pihA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.51 | 37.0 | 3.97e-01 | 97.6% | 91.7% |
| 3ms6A00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.51 | 38.0 | 3.79e-01 | 81.0% | 83.3% |
| 1gcyA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 32.0 | 3.87e-01 | 100.0% | 98.2% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 38.0 | 3.17e-01 | 81.0% | 52.0% |
| 3sd2A01 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 36.0 | 3.76e-01 | 97.6% | 83.1% |
| 1kyfA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.50 | 44.0 | 4.03e-01 | 100.0% | 82.3% |
| 6xaxA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 3.71e-01 | 97.6% | 78.8% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3727868 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.68 | 54.0 | 3.65e-01 | 83.3% | 28.9% |
| 3190430 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 53.0 | 4.10e-01 | 85.7% | 74.1% |
| 1005444 | 295.2.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › Outer surface protein E › Outer surface protein E › OspE | 0.65 | 50.0 | 4.12e-01 | 82.1% | 81.5% |
| 3791593 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 50.0 | 4.13e-01 | 90.5% | 77.3% |
| 3199439 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 47.0 | 3.63e-01 | 85.7% | 78.9% |
| 3693957 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.58 | 47.0 | 3.62e-01 | 89.3% | 81.0% |
| 4930498 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 43.0 | 4.09e-01 | 79.8% | 93.0% |
| 5052025 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 45.0 | 3.94e-01 | 83.3% | 67.5% |
| 3922389 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 44.0 | 3.85e-01 | 85.7% | 56.2% |
| 4297645 | 5043.1.1.19 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › CusS | 0.56 | 46.0 | 3.64e-01 | 90.5% | 61.7% |
| 6698 | 244.1.1.18 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding-like | 0.56 | 45.0 | 3.91e-01 | 88.1% | 97.7% |
| 3940520 | 223.2.1.34 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 | 0.55 | 43.0 | 3.47e-01 | 82.1% | 54.2% |
| 3698542 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.55 | 41.0 | 3.17e-01 | 100.0% | 33.7% |
| 3262203 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 43.0 | 3.54e-01 | 85.7% | 46.5% |
| 4139867 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.54 | 41.0 | 3.99e-01 | 82.1% | 71.6% |
| 3244753 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 43.0 | 3.29e-01 | 83.3% | 47.0% |
| 4959273 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.53 | 40.0 | 3.31e-01 | 79.8% | 61.3% |
| 3815852 | 60.1.1.10 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › PF28898 | 0.53 | 47.0 | 4.00e-01 | 100.0% | 60.7% |
| 3808055 | 244.1.1.29 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › AAA_assoc | 0.53 | 41.0 | 3.60e-01 | 81.0% | 80.0% |
| 3286341 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 41.0 | 3.44e-01 | 81.0% | 51.1% |
| 4386724 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.53 | 36.0 | 3.35e-01 | 100.0% | 53.6% |
| 3978531 | 223.1.1.58 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N | 0.53 | 45.0 | 3.70e-01 | 94.0% | 74.2% |
| 4431434 | 223.1.1.43 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CusS | 0.53 | 45.0 | 3.58e-01 | 94.0% | 62.4% |
| 4947839 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 41.0 | 3.58e-01 | 83.3% | 63.2% |
| 3713085 | 206.1.3.12 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL | 0.52 | 41.0 | 2.69e-01 | 86.9% | 62.9% |
| 4638995 | 71.1.1.15 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 | 0.52 | 45.0 | 3.56e-01 | 100.0% | 76.8% |
| 3963488 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.52 | 43.0 | 3.93e-01 | 96.4% | 67.0% |
| 4980695 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 38.0 | 3.50e-01 | 77.4% | 84.5% |
| 4995743 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.52 | 47.0 | 4.14e-01 | 100.0% | 89.2% |
| 4973785 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.51 | 38.0 | 3.45e-01 | 79.8% | 82.6% |
| 143706 | 11.1.1.146 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3244 | 0.51 | 38.0 | 3.83e-01 | 100.0% | 79.1% |
| 3858822 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 38.0 | 3.76e-01 | 97.6% | 76.7% |
| 3769768 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.50 | 39.0 | 2.60e-01 | 88.1% | 61.5% |
| 1681023 | 5.1.3.117 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 | 0.50 | 43.0 | 2.93e-01 | 100.0% | 90.2% |