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SRR1747030_scaffold_3_prodigal-single.1__X__X__00075
Bact-VirSRR1747030_scaffold_3_prodigal-single.1__X__X__00075
Identity
- Kingdom:
- phage
Quality
82.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-92
Domain cluster:
rep: IMGVR_UViG_3300029781_000008-3300029781-Ga0167330_100040315__D28-98
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5z3gZ01 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.60 | 42.0 | 3.80e-01 | 78.0% | 54.0% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.59 | 47.0 | 4.27e-01 | 85.7% | 72.5% |
| 2onfA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.59 | 38.0 | 3.38e-01 | 82.4% | 44.0% |
| 3rv0B03 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 36.0 | 3.85e-01 | 82.4% | 70.9% |
| 2d9uA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 28.0 | 3.11e-01 | 80.2% | 54.1% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.56 | 45.0 | 3.98e-01 | 89.0% | 71.4% |
| 6cz7A01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.56 | 30.0 | 3.49e-01 | 89.0% | 74.2% |
| 3pf7B00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.55 | 46.0 | 2.93e-01 | 90.1% | 68.1% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 39.0 | 3.86e-01 | 75.8% | 71.7% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 41.0 | 4.01e-01 | 82.4% | 76.2% |
| 1w0pA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 36.0 | 2.97e-01 | 71.4% | 42.4% |
| 4uy9A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 31.0 | 3.17e-01 | 90.1% | 58.9% |
| 1vrmA01 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.52 | 36.0 | 2.76e-01 | 76.9% | 31.7% |
| 2o34A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.51 | 45.0 | 3.27e-01 | 96.7% | 48.6% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 31.0 | 3.64e-01 | 94.5% | 90.2% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.51 | 35.0 | 3.48e-01 | 72.5% | 100.0% |
| 4z9cB00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 40.0 | 3.76e-01 | 86.8% | 97.4% |
| 3u1kC01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.51 | 36.0 | 2.70e-01 | 74.7% | 63.3% |
| 6w0pA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 40.0 | 2.63e-01 | 86.8% | 88.6% |
| 2e9hA01 | 3.30.30.170 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.50 | 35.0 | 3.29e-01 | 72.5% | 78.8% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3578128 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.72 | 36.0 | 4.42e-01 | 76.9% | 78.2% |
| 4992408 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 30.0 | 4.10e-01 | 100.0% | 80.0% |
| 3705153 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 46.0 | 4.04e-01 | 71.4% | 54.1% |
| 4929636 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 48.0 | 4.71e-01 | 79.1% | 75.0% |
| 3584264 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.62 | 47.0 | 4.27e-01 | 81.3% | 66.4% |
| 3789602 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 47.0 | 4.26e-01 | 81.3% | 66.4% |
| 5072187 | 321.1.1.7 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 | 0.61 | 47.0 | 2.99e-01 | 81.3% | 90.4% |
| 3269549 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 41.0 | 3.46e-01 | 72.5% | 45.2% |
| 4943564 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.59 | 43.0 | 4.49e-01 | 76.9% | 83.5% |
| 3834262 | 223.2.1.15 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Longin | 0.58 | 52.0 | 4.53e-01 | 100.0% | 75.0% |
| 3239418 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 43.0 | 3.21e-01 | 79.1% | 61.3% |
| 3627778 | 220.1.1.64 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII | 0.56 | 41.0 | 3.98e-01 | 75.8% | 72.0% |
| 3810543 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.56 | 44.0 | 4.15e-01 | 84.6% | 76.4% |
| 3912902 | 233.1.1.3 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha | 0.56 | 38.0 | 3.94e-01 | 87.9% | 75.3% |
| 4008035 | 223.1.1.112 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30417 | 0.56 | 39.0 | 2.80e-01 | 73.6% | 96.7% |
| 5048797 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.55 | 40.0 | 4.02e-01 | 76.9% | 97.9% |
| 3980370 | 241.13.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA | 0.54 | 48.0 | 4.18e-01 | 100.0% | 78.6% |
| 3179206 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 34.0 | 3.67e-01 | 81.3% | 74.7% |
| 3234330 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.54 | 37.0 | 3.46e-01 | 70.3% | 97.3% |
| 3345277 | 2003.1.5.31 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS | 0.53 | 42.0 | 2.75e-01 | 85.7% | 74.8% |
| 4996048 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 47.0 | 4.18e-01 | 100.0% | 96.2% |
| 4203238 | 220.1.1.217 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM | 0.53 | 43.0 | 3.18e-01 | 90.1% | 50.4% |
| 4026701 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.52 | 40.0 | 3.19e-01 | 83.5% | 75.0% |
| 3922917 | 2004.1.1.54 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin | 0.52 | 38.0 | 2.53e-01 | 76.9% | 28.1% |
| 5057564 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 41.0 | 3.39e-01 | 84.6% | 71.9% |
| 5038289 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 44.0 | 3.95e-01 | 96.7% | 97.0% |