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SRR1747030_scaffold_3_prodigal-single.1__X__X__00092

Bact-Vir

SRR1747030_scaffold_3_prodigal-single.1__X__X__00092

Identity

Kingdom:
phage

Quality

84.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-97
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 44.0 4.22e-01 93.8% 93.2%
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 36.0 2.87e-01 75.0% 93.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3599680 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.60 42.0 3.30e-01 87.5% 35.6%
4890201 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 50.0 2.78e-01 100.0% 12.5%
4396191 2004.1.1.80 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.56 46.0 3.29e-01 96.9% 41.4%
4950681 375.1.1.85 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 0.55 34.0 3.25e-01 75.0% 50.0%
4992749 629.1.1.1 ↗ alpha bundles › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › Nitrate_red_del 0.54 40.0 2.76e-01 82.8% 27.3%
3941314 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 39.0 3.31e-01 82.8% 84.2%
3383958 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 42.0 2.88e-01 100.0% 60.3%
3623796 4154.1.1.1 ↗ beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › DP 0.52 37.0 2.92e-01 79.7% 90.0%