←Back to structures
SRR1747030_scaffold_3_prodigal-single.1__X__X__00134
Bact-VirSRR1747030_scaffold_3_prodigal-single.1__X__X__00134
Identity
- Kingdom:
- phage
Quality
64.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-70
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.86 | 59.0 | 5.81e-01 | 72.5% | 67.3% |
| 4lzjA02 | 1.10.8.1080 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.82 | 56.0 | 4.73e-01 | 70.6% | 45.6% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.81 | 55.0 | 4.48e-01 | 76.5% | 39.6% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.78 | 62.0 | 4.29e-01 | 84.3% | 87.1% |
| 3r64A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.78 | 67.0 | 4.15e-01 | 96.1% | 18.2% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.78 | 63.0 | 4.31e-01 | 86.3% | 83.4% |
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.78 | 57.0 | 4.67e-01 | 80.4% | 42.7% |
| 2lo0A00 | 1.10.286.70 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain | 0.77 | 58.0 | 6.12e-01 | 82.4% | 93.3% |
| 4d3pA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.76 | 57.0 | 4.07e-01 | 80.4% | 85.0% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.73 | 65.0 | 4.98e-01 | 100.0% | 79.8% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 58.0 | 5.60e-01 | 92.2% | 75.9% |
| 3aqlA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.73 | 62.0 | 4.01e-01 | 98.0% | 45.2% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.72 | 54.0 | 4.95e-01 | 80.4% | 63.6% |
| 2lnzA00 | 1.10.286.70 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain | 0.69 | 50.0 | 5.47e-01 | 86.3% | 100.0% |
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 52.0 | 4.16e-01 | 82.4% | 64.7% |
| 1ng6A02 | 1.10.10.410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.67 | 48.0 | 4.68e-01 | 76.5% | 71.9% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.67 | 51.0 | 5.37e-01 | 94.1% | 95.6% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.66 | 47.0 | 4.60e-01 | 80.4% | 70.2% |
| 6v88A00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.65 | 48.0 | 3.74e-01 | 80.4% | 62.1% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.64 | 50.0 | 3.34e-01 | 90.2% | 20.4% |
| 3c24A02 | 1.10.3640.10 | Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal | 0.64 | 54.0 | 4.35e-01 | 96.1% | 52.0% |
| 3gohA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.63 | 50.0 | 3.37e-01 | 86.3% | 46.5% |
| 3cjlA00 | 3.10.20.850 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 | 0.63 | 54.0 | 4.60e-01 | 100.0% | 75.0% |
| 3vokA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 50.0 | 3.47e-01 | 88.2% | 54.0% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.62 | 53.0 | 3.57e-01 | 98.0% | 58.9% |
| 4g4sO01 | 3.40.50.12120 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › POC1 chaperone | 0.61 | 45.0 | 3.06e-01 | 80.4% | 21.0% |
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 51.0 | 3.71e-01 | 98.0% | 32.9% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.61 | 52.0 | 4.67e-01 | 94.1% | 97.1% |
| 2dbgA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.60 | 42.0 | 3.44e-01 | 76.5% | 38.8% |
| 4mfiA00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 52.0 | 3.08e-01 | 100.0% | 80.9% |
| 4j31A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 49.0 | 3.03e-01 | 100.0% | 14.8% |
| 2z8fB02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 44.0 | 3.00e-01 | 90.2% | 25.1% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.58 | 49.0 | 4.95e-01 | 94.1% | 94.0% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 46.0 | 4.34e-01 | 100.0% | 98.5% |
| 1rp5A03 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 43.0 | 3.70e-01 | 92.2% | 86.7% |
| 2b61A02 | 1.10.1740.110 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.53 | 45.0 | 3.59e-01 | 96.1% | 47.1% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4467072 | 101.1.9.142 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2015 | 0.88 | 67.0 | 5.54e-01 | 78.4% | 56.2% |
| 5009535 | 148.1.3.410 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF6955 | 0.86 | 58.0 | 4.58e-01 | 70.6% | 36.0% |
| 3275070 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.85 | 60.0 | 5.01e-01 | 74.5% | 45.9% |
| 3838579 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.83 | 67.0 | 5.64e-01 | 86.3% | 93.8% |
| 5056432 | 607.1.1.0 ↗ | alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain | 0.82 | 63.0 | 4.66e-01 | 82.4% | 33.6% |
| 4012761 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.82 | 56.0 | 3.48e-01 | 72.5% | 13.7% |
| 5056276 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.81 | 72.0 | 5.01e-01 | 98.0% | 84.4% |
| 5047497 | 1045.1.1.0 ↗ | alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 | 0.80 | 57.0 | 5.25e-01 | 78.4% | 60.0% |
| 5058906 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 57.0 | 4.87e-01 | 80.4% | 48.8% |
| 5057411 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.79 | 59.0 | 5.06e-01 | 84.3% | 51.2% |
| 3678066 | 101.1.11.40 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1677 | 0.79 | 62.0 | 5.52e-01 | 84.3% | 88.6% |
| 4936146 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.78 | 63.0 | 6.18e-01 | 88.2% | 81.8% |
| 4150602 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.78 | 69.0 | 4.22e-01 | 100.0% | 21.3% |
| 5036826 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.78 | 57.0 | 4.84e-01 | 82.4% | 48.8% |
| 3837790 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.77 | 64.0 | 4.94e-01 | 92.2% | 68.2% |
| 3784553 | 592.1.1.6 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 | 0.76 | 64.0 | 5.33e-01 | 92.2% | 55.3% |
| 4102625 | 132.3.1.1 ↗ | alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ › CsbD | 0.75 | 53.0 | 5.01e-01 | 74.5% | 98.3% |
| 3254140 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.74 | 65.0 | 4.37e-01 | 94.1% | 98.3% |
| 3799156 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 61.0 | 5.36e-01 | 90.2% | 63.5% |
| 5003091 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.74 | 54.0 | 5.16e-01 | 78.4% | 66.7% |
| 3947387 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.74 | 61.0 | 3.75e-01 | 100.0% | 15.4% |
| 4134287 | 131.2.1.2 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_arg_C,PolyA_pol_RNAbd | 0.74 | 65.0 | 4.09e-01 | 98.0% | 43.9% |
| 3702846 | 308.1.1.1 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 | 0.73 | 49.0 | 4.46e-01 | 74.5% | 51.4% |
| 3967801 | 2006.1.3.16 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF1835 | 0.72 | 55.0 | 3.75e-01 | 84.3% | 37.3% |
| 3469102 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.72 | 50.0 | 3.80e-01 | 92.2% | 31.7% |
| 3943444 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.71 | 63.0 | 3.90e-01 | 100.0% | 22.9% |
| 5023675 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.70 | 53.0 | 3.84e-01 | 88.2% | 30.8% |
| 4999398 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.70 | 61.0 | 3.87e-01 | 98.0% | 67.1% |
| 3552352 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.66 | 55.0 | 4.77e-01 | 98.0% | 92.9% |
| 3589629 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.66 | 59.0 | 3.90e-01 | 98.0% | 68.3% |
| 4162420 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.65 | 45.0 | 3.47e-01 | 92.2% | 30.4% |
| 4929489 | 101.1.2.897 ↗ | alpha arrays › HTH › HTH › winged helix domain › Zn_ribbon_2 | 0.64 | 46.0 | 4.27e-01 | 76.5% | 73.8% |
| 3636418 | 2003.1.1.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA | 0.64 | 52.0 | 3.23e-01 | 90.2% | 33.4% |
| 5053233 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.64 | 45.0 | 3.80e-01 | 90.2% | 44.7% |
| 5065662 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.63 | 52.0 | 4.77e-01 | 98.0% | 75.7% |
| 3923696 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.63 | 50.0 | 4.30e-01 | 96.1% | 83.3% |
| 4943010 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.63 | 54.0 | 4.60e-01 | 98.0% | 62.4% |
| None | — | 0.62 | 47.0 | 4.38e-01 | 82.4% | 84.4% | |
| 3933184 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.60 | 46.0 | 4.16e-01 | 92.2% | 60.0% |
| 3253152 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.59 | 45.0 | 3.95e-01 | 92.2% | 52.2% |
| 5027497 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.57 | 50.0 | 4.29e-01 | 98.0% | 71.2% |
| 3269592 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.56 | 44.0 | 3.78e-01 | 94.1% | 51.8% |