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SRR1747030_scaffold_3_prodigal-single.1__X__X__00162
Bact-VirSRR1747030_scaffold_3_prodigal-single.1__X__X__00162
Identity
- Kingdom:
- phage
Quality
81.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 53-119
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00412.29 best | LIM | 23.0 | 1.10e-04 | 82.1% | 48.3% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xqnT01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.71 | 44.0 | 4.64e-01 | 77.6% | 69.4% |
| 4jcjC02 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.70 | 42.0 | 4.47e-01 | 71.6% | 69.0% |
| 2dsmA00 | 3.30.40.30 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › YqaI domain | 0.67 | 41.0 | 4.02e-01 | 73.1% | 56.9% |
| 1x62A01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.66 | 41.0 | 4.34e-01 | 71.6% | 70.0% |
| 2d8yA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.66 | 42.0 | 4.13e-01 | 73.1% | 59.7% |
| 2dloA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.66 | 42.0 | 4.00e-01 | 74.6% | 54.3% |
| 6u4mA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.66 | 43.0 | 4.39e-01 | 79.1% | 69.2% |
| 2xjyA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.66 | 44.0 | 4.53e-01 | 73.1% | 73.0% |
| 2d8xA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.65 | 41.0 | 4.06e-01 | 73.1% | 61.4% |
| 1x68A00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.64 | 43.0 | 4.14e-01 | 71.6% | 60.5% |
| 2ecjA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 38.0 | 4.07e-01 | 71.6% | 69.0% |
| 5feyA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 46.0 | 4.42e-01 | 97.0% | 84.6% |
| 1m2vB04 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.54 | 42.0 | 2.94e-01 | 86.6% | 43.6% |
| 2fbkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 2.72e-01 | 91.0% | 30.1% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4990542 | 377.1.1.128 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF2175 | 0.77 | 50.0 | 6.06e-01 | 71.6% | 100.0% |
| 5071927 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.73 | 51.0 | 5.61e-01 | 73.1% | 100.0% |
| 3187970 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 53.0 | 5.53e-01 | 76.1% | 85.0% |
| 4945028 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.72 | 51.0 | 4.91e-01 | 73.1% | 74.3% |
| 3522976 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.72 | 51.0 | 4.80e-01 | 74.6% | 82.5% |
| 4975289 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.72 | 53.0 | 5.55e-01 | 77.6% | 100.0% |
| 3738593 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.71 | 53.0 | 5.10e-01 | 79.1% | 90.7% |
| 3497361 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 47.0 | 5.23e-01 | 79.1% | 92.0% |
| 4996272 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.69 | 56.0 | 5.88e-01 | 85.1% | 100.0% |
| 3675510 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.69 | 51.0 | 5.36e-01 | 79.1% | 88.3% |
| 3786603 | 376.1.1.106 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF29452 | 0.69 | 54.0 | 5.03e-01 | 82.1% | 98.8% |
| 4298719 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.68 | 58.0 | 5.17e-01 | 98.5% | 83.0% |
| 3361155 | 377.1.1.106 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PHD_NSD | 0.68 | 50.0 | 5.22e-01 | 79.1% | 86.7% |
| 3175980 | 376.1.1.155 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41, PF31263 | 0.68 | 50.0 | 4.59e-01 | 77.6% | 90.6% |
| 4852319 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.67 | 46.0 | 4.84e-01 | 70.1% | 100.0% |
| 3172571 | 376.1.1.106 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF29452 | 0.66 | 50.0 | 4.81e-01 | 80.6% | 89.3% |
| 3648747 | 376.1.3.62 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_Oberon | 0.65 | 49.0 | 4.60e-01 | 79.1% | 87.5% |
| 3331318 | 376.1.1.40 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 | 0.65 | 48.0 | 4.95e-01 | 77.6% | 87.7% |
| 3642366 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.65 | 47.0 | 4.91e-01 | 82.1% | 85.0% |
| 3911271 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 48.0 | 4.94e-01 | 82.1% | 98.5% |
| 3718306 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.62 | 54.0 | 4.40e-01 | 98.5% | 69.2% |
| 3431661 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.62 | 44.0 | 4.59e-01 | 74.6% | 95.0% |
| 3423212 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.61 | 42.0 | 4.04e-01 | 82.1% | 61.3% |
| 3702317 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.60 | 46.0 | 4.70e-01 | 82.1% | 100.0% |
| 3688523 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.60 | 53.0 | 4.71e-01 | 98.5% | 89.5% |
| 4011070 | 376.1.1.106 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF29452 | 0.59 | 49.0 | 4.64e-01 | 89.6% | 80.0% |
| 3224012 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 42.0 | 3.91e-01 | 76.1% | 70.6% |
| 5031333 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.58 | 36.0 | 4.07e-01 | 73.1% | 91.1% |
| 3374316 | 376.1.3.9 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 | 0.58 | 38.0 | 3.91e-01 | 83.6% | 69.2% |
| 3649768 | 376.1.3.9 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 | 0.58 | 39.0 | 4.28e-01 | 80.6% | 85.5% |
| 4960851 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 31.0 | 3.88e-01 | 89.6% | 100.0% |
| 3734179 | 101.1.2.359 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD | 0.56 | 32.0 | 2.95e-01 | 76.1% | 41.1% |
| 5020161 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.56 | 47.0 | 3.64e-01 | 98.5% | 75.6% |
| 3419900 | 375.1.1.200 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 | 0.56 | 30.0 | 3.86e-01 | 89.6% | 100.0% |
| 3737200 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.55 | 40.0 | 4.15e-01 | 76.1% | 86.7% |
| 4002677 | 7579.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase | 0.52 | 43.0 | 2.60e-01 | 100.0% | 25.6% |
D2
medium
residues 156-244
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.80 | 38.0 | 4.05e-01 | 100.0% | 52.6% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.50 | 42.0 | 3.71e-01 | 96.6% | 90.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3308688 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.55 | 41.0 | 4.34e-01 | 83.1% | 94.7% |
| 3697800 | 3559.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 | 0.53 | 38.0 | 3.59e-01 | 79.8% | 59.1% |
| 4033868 | 604.39.1.16 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ThiW | 0.52 | 38.0 | 3.23e-01 | 78.7% | 81.9% |
| 3910521 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.51 | 37.0 | 3.53e-01 | 76.4% | 88.6% |
| 4024301 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 35.0 | 3.43e-01 | 95.5% | 66.3% |