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SRR1747030_scaffold_3_prodigal-single.1__X__X__00200

Bact-Vir

SRR1747030_scaffold_3_prodigal-single.1__X__X__00200

Identity

Kingdom:
phage

Quality

89.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-153
PDB
Pfam (4)
AccessionNameScoreE-valueQ covHMM cov
PF00877.26 best NLPC_P60 31.8 1.70e-07 80.1% 78.1%
PF05382.20 Amidase_5 26.6 6.80e-06 72.2% 55.6%
PF25309.2 ELLD 40.4 4.20e-10 58.3% 47.4%
PF25309.2 ELLD 44.3 2.70e-11 27.2% 22.0%
D2 high residues 173-248
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01471.24 best PG_binding_1 62.7 4.20e-17 77.6% 98.2%
D3 high residues 262-335
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.84 75.0 7.64e-01 100.0% 98.6%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 66.0 6.61e-01 93.2% 86.5%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 56.0 5.85e-01 91.9% 79.4%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 57.0 6.33e-01 91.9% 94.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 51.0 5.41e-01 93.2% 75.4%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 55.0 5.86e-01 91.9% 83.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 56.0 6.23e-01 91.9% 93.2%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 57.0 6.34e-01 90.5% 96.6%
1m9sA03 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.78 68.0 6.81e-01 100.0% 94.7%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 49.0 5.82e-01 89.2% 100.0%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 57.0 5.99e-01 91.9% 86.6%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 56.0 6.06e-01 95.9% 91.9%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 57.0 5.70e-01 94.6% 77.3%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 54.0 5.85e-01 90.5% 88.7%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 59.0 5.98e-01 93.2% 82.4%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 57.0 6.12e-01 91.9% 92.1%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 56.0 5.80e-01 95.9% 82.9%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.75 68.0 6.47e-01 100.0% 86.0%
2m0yA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 58.0 5.89e-01 100.0% 83.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 60.0 6.33e-01 97.3% 95.5%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 60.0 5.80e-01 97.3% 77.8%
2mk5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 67.0 5.52e-01 100.0% 64.1%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 57.0 6.09e-01 95.9% 93.8%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 47.0 5.40e-01 91.9% 98.0%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 55.0 5.93e-01 95.9% 95.3%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 57.0 5.95e-01 95.9% 92.6%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 55.0 5.80e-01 95.9% 92.5%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 5.23e-01 91.9% 80.8%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 42.0 4.80e-01 91.9% 95.9%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 41.0 4.48e-01 97.3% 85.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.64 44.0 4.54e-01 98.6% 79.1%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 58.0 5.21e-01 100.0% 77.6%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.90e-01 97.3% 86.1%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.17e-01 98.6% 54.9%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 42.0 4.29e-01 77.0% 80.0%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 38.0 4.02e-01 90.5% 77.3%
1o7fA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 3.42e-01 100.0% 40.6%
3shrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 42.0 3.43e-01 100.0% 44.5%
2e9xD02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.54 39.0 4.20e-01 100.0% 95.0%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 44.0 3.20e-01 97.3% 60.9%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.97e-01 75.7% 96.7%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.50 42.0 4.06e-01 93.2% 98.8%
6hbeA01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.50 36.0 3.01e-01 75.7% 56.4%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 44.0 3.38e-01 100.0% 94.8%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4602101 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.90 71.0 7.55e-01 95.9% 93.8%
2410170 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.88 68.0 7.37e-01 91.9% 95.2%
1320680 4.1.1.115 beta barrels › SH3 › SH3 › SH3 › LytB_SH3 0.87 69.0 7.22e-01 93.2% 91.0%
4033059 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 76.0 7.44e-01 100.0% 88.7%
4261760 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 77.0 6.99e-01 97.3% 80.0%
4207556 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 71.0 7.36e-01 91.9% 95.7%
4682138 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 72.0 7.23e-01 100.0% 93.3%
3204891 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 70.0 6.98e-01 90.5% 94.7%
3849311 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 60.0 6.61e-01 93.2% 95.0%
3629012 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 60.0 6.00e-01 95.9% 76.0%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.80 60.0 6.48e-01 91.9% 92.1%
4009391 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 65.0 6.36e-01 93.2% 81.2%
4082863 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 59.0 6.06e-01 95.9% 81.4%
4029093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 54.0 4.17e-01 95.9% 33.5%
3222195 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 61.0 6.49e-01 95.9% 92.3%
3231675 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.79 59.0 6.10e-01 95.9% 82.9%
3498357 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 57.0 5.93e-01 91.9% 80.0%
3480204 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.79 60.0 6.43e-01 95.9% 90.8%
4091791 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 70.0 6.97e-01 95.9% 92.0%
5004050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 51.0 5.26e-01 97.3% 70.0%
3482677 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 60.0 6.20e-01 95.9% 84.3%
3715828 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.78 69.0 6.78e-01 95.9% 91.3%
3188199 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 58.0 5.62e-01 93.2% 71.2%
3416133 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 57.0 5.68e-01 91.9% 74.7%
3476188 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 56.0 5.64e-01 91.9% 74.7%
3259043 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.78 58.0 6.03e-01 95.9% 82.9%
3522694 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.77 58.0 5.26e-01 91.9% 61.1%
3920897 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.77 57.0 5.67e-01 90.5% 76.0%
3535424 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.77 58.0 6.00e-01 95.9% 84.3%
3766868 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 59.0 5.49e-01 94.6% 66.7%
3486189 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 58.0 6.34e-01 94.6% 98.3%
154312 4.1.1.65 beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.76 51.0 5.26e-01 95.9% 72.9%
3930461 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 57.0 5.70e-01 95.9% 77.3%
3783847 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 57.0 6.12e-01 93.2% 90.8%
3912726 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 58.0 6.01e-01 91.9% 85.7%
3254502 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.76 58.0 5.31e-01 90.5% 63.2%
3895155 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 58.0 5.69e-01 94.6% 75.0%
4185893 4.1.1.394 beta barrels › SH3 › SH3 › SH3 › SlpA 0.75 61.0 6.51e-01 91.9% 100.0%
3213828 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 58.0 5.00e-01 91.9% 54.5%
3897602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 58.0 5.33e-01 97.3% 64.2%
3707023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 66.0 5.96e-01 95.9% 77.0%
3917464 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 57.0 6.11e-01 94.6% 92.3%
4012002 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 59.0 6.09e-01 94.6% 88.6%
3607307 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 58.0 6.00e-01 91.9% 87.1%
3180487 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 59.0 4.25e-01 93.2% 31.8%
3538030 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 57.0 5.92e-01 94.6% 85.7%
3474075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 56.0 5.68e-01 90.5% 79.7%
3203654 601.16.1.12 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_1 0.74 57.0 4.10e-01 93.2% 30.5%
3710561 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 59.0 6.26e-01 95.9% 96.9%
3879132 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 58.0 5.82e-01 95.9% 82.7%
3570230 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 59.0 5.46e-01 94.6% 70.0%
3488995 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 56.0 5.95e-01 95.9% 92.3%
3620934 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 59.0 5.72e-01 98.6% 78.8%
3561094 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 58.0 5.83e-01 95.9% 84.0%
3594081 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 61.0 6.03e-01 93.2% 92.5%
4054649 4.1.1.86 beta barrels › SH3 › SH3 › SH3 › GW 0.72 63.0 6.35e-01 98.6% 96.0%
3939132 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 58.0 5.23e-01 95.9% 64.0%
3511375 4.1.1.349 beta barrels › SH3 › SH3 › SH3 › ROF 0.72 52.0 5.01e-01 98.6% 67.1%
3236896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 58.0 5.99e-01 98.6% 91.4%
3786196 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 60.0 4.22e-01 95.9% 30.5%
4208181 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.71 55.0 5.83e-01 94.6% 93.8%
3925642 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 58.0 5.18e-01 97.3% 64.0%
3503332 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 58.0 6.15e-01 91.9% 100.0%
4118552 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 51.0 5.11e-01 98.6% 76.0%
3286662 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 52.0 4.65e-01 97.3% 58.0%
4138935 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.69 60.0 6.04e-01 97.3% 94.7%
3687614 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 62.0 5.84e-01 100.0% 90.0%
3387119 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 48.0 4.54e-01 97.3% 61.1%
3171604 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 57.0 5.71e-01 93.2% 88.0%
3612184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.71e-01 98.6% 80.0%
3281271 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 51.0 4.77e-01 97.3% 65.6%
4010681 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 47.0 4.38e-01 97.3% 57.9%
3937006 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.70e-01 93.2% 89.7%
3773104 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 56.0 4.56e-01 97.3% 71.9%
4607576 4.1.1.370 beta barrels › SH3 › SH3 › SH3 › PF28261 0.62 46.0 4.73e-01 100.0% 84.3%
3589730 4.1.1.252 beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.59 47.0 4.68e-01 95.9% 85.0%
3994897 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.54 39.0 4.27e-01 100.0% 96.7%