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SRR1747030_scaffold_3_prodigal-single.1__X__X__00209

Bact-Vir

SRR1747030_scaffold_3_prodigal-single.1__X__X__00209

Identity

Kingdom:
phage

Quality

49.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 965-1062
PDB
Domain cluster: rep: IMGVR_UViG_3300010235_000004-3300010235-Ga0136247_100002931__D99-185
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 28.5 2.10e-06 46.9% 74.1%
D2 medium residues 1-71
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.69 43.0 4.95e-01 70.4% 88.2%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.60 41.0 3.27e-01 70.4% 51.8%
6p8uA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 45.0 3.58e-01 80.3% 75.7%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 41.0 3.56e-01 74.6% 51.8%
5z1gB01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.58 48.0 3.48e-01 91.5% 79.9%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.57 39.0 3.12e-01 70.4% 72.1%
3ejxA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 46.0 3.76e-01 100.0% 83.7%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 40.0 3.19e-01 77.5% 66.4%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.54 36.0 3.21e-01 70.4% 70.6%
1a10I00 3.30.10.10 Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A 0.53 38.0 3.99e-01 77.5% 93.7%
3e0jA01 3.60.21.50 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › 0.52 43.0 2.99e-01 100.0% 93.6%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 40.0 2.69e-01 85.9% 83.1%
5o46A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.16e-01 74.6% 93.0%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 36.0 2.87e-01 76.1% 62.4%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 31.0 3.29e-01 97.2% 73.2%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.89e-01 100.0% 95.9%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.78e-01 100.0% 86.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3481737 4126.1.1.1 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.71 49.0 3.31e-01 71.8% 89.6%
4999472 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 49.0 3.61e-01 85.9% 29.5%
3404254 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.66 55.0 4.30e-01 91.5% 94.0%
3518602 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.64 49.0 3.64e-01 81.7% 80.0%
4960299 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.61 52.0 4.03e-01 97.2% 93.3%
3671668 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 35.0 2.56e-01 95.8% 23.2%
3953959 4.1.1.424 ↗ beta barrels › SH3 › SH3 › SH3 › PF29823 0.59 34.0 3.86e-01 95.8% 80.0%
5046549 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 36.0 3.55e-01 85.9% 56.2%
None — 0.57 51.0 3.18e-01 97.2% 98.1%
3697241 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.57 33.0 3.77e-01 73.2% 77.4%
3266790 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 50.0 3.07e-01 97.2% 93.6%
4152359 2008.1.1.199 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_XamI 0.53 45.0 3.16e-01 100.0% 84.2%
3655486 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 37.0 3.00e-01 76.1% 62.6%
5018558 2008.1.1.162 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30170 0.53 39.0 3.24e-01 80.3% 50.4%
4014976 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 37.0 2.32e-01 77.5% 46.9%
4980041 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 31.0 3.75e-01 74.6% 97.8%
4027092 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 37.0 3.28e-01 78.9% 55.5%
4948072 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.50 41.0 2.98e-01 90.1% 46.8%
3501098 4126.1.1.1 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.50 34.0 2.48e-01 74.6% 34.9%