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SRR1747030_scaffold_3_prodigal-single.1__X__X__00210

Bact-Vir

SRR1747030_scaffold_3_prodigal-single.1__X__X__00210

Identity

Kingdom:
phage

Quality

83.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-87
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jb9L00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 35.0 2.33e-01 72.2% 14.0%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 35.0 2.32e-01 75.9% 14.1%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.58 41.0 3.70e-01 74.7% 97.2%
7qs0A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.55 40.0 3.16e-01 78.5% 67.6%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.54 38.0 3.22e-01 72.2% 98.5%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 31.0 3.10e-01 70.9% 53.0%
2wl1A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.53 40.0 3.05e-01 82.3% 59.7%
1gycA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 39.0 3.09e-01 81.0% 85.3%
2ykyB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 41.0 3.06e-01 83.5% 96.8%
3g7qA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 37.0 2.96e-01 74.7% 61.5%
4b8eB00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.52 38.0 2.98e-01 79.7% 59.4%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 37.0 2.44e-01 74.7% 28.6%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.52 38.0 3.14e-01 78.5% 58.9%
5i92F01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 37.0 2.92e-01 75.9% 48.3%
2fbeA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.51 37.0 2.95e-01 79.7% 60.6%
1xi9B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 36.0 2.99e-01 74.7% 59.0%
6iw6B01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.50 36.0 2.68e-01 75.9% 42.7%
3oksA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 37.0 2.88e-01 78.5% 37.5%
4le7A01 2.90.10.30 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › 0.50 36.0 2.90e-01 77.2% 66.3%
4xw3A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.50 37.0 2.86e-01 79.7% 36.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3703422 5.1.4.598 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7914 0.62 37.0 2.36e-01 72.2% 11.3%
3740570 2.1.1.120 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis32-like_C 0.60 32.0 3.02e-01 70.9% 43.2%
3583260 220.1.1.187 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.56 44.0 3.92e-01 84.8% 94.8%
3996551 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 38.0 3.72e-01 70.9% 92.2%
3772363 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.55 41.0 3.16e-01 78.5% 61.6%
3439221 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.55 42.0 3.19e-01 81.0% 71.6%
3669028 1129.1.1.1 ↗ a+b three layers › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › NDUFA12 0.53 38.0 3.51e-01 75.9% 61.9%
3773248 10.1.1.9 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.52 39.0 2.95e-01 82.3% 36.1%
3244287 223.2.1.34 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.52 37.0 2.90e-01 75.9% 38.8%
4016755 206.1.1.82 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF7580 0.51 36.0 2.49e-01 74.7% 36.9%
1349153 5.1.11.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.51 37.0 2.30e-01 77.2% 24.5%
3419955 5.1.3.207 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40, NBCH_WD40 0.50 38.0 2.49e-01 81.0% 25.4%
3741704 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.50 37.0 3.24e-01 81.0% 77.7%
D2 medium residues 237-334
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wt7B00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 48.0 5.06e-01 71.4% 77.8%