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SRR1747030_scaffold_3_prodigal-single.1__X__X__00211

Bact-Vir

SRR1747030_scaffold_3_prodigal-single.1__X__X__00211

Identity

Kingdom:
phage

Quality

72.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-51
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.86 73.0 7.51e-01 97.8% 100.0%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.83 68.0 6.49e-01 100.0% 78.2%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.74 62.0 5.92e-01 97.8% 87.5%
2azpA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.74 63.0 4.32e-01 97.8% 38.5%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.70 60.0 4.61e-01 100.0% 49.1%
1wdjA00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.70 58.0 3.96e-01 100.0% 27.4%
6k8nA01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.69 50.0 3.47e-01 78.3% 57.6%
3rheA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.68 46.0 3.37e-01 100.0% 28.1%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.68 49.0 3.60e-01 84.8% 27.4%
3ot2A00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.68 58.0 3.92e-01 100.0% 28.5%
8f66A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.67 57.0 3.77e-01 100.0% 39.5%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.66 52.0 3.97e-01 91.3% 46.6%
5ha4A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.66 54.0 4.00e-01 97.8% 45.6%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.66 57.0 4.35e-01 100.0% 98.2%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.64 56.0 3.78e-01 100.0% 96.5%
3zihA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.64 48.0 4.10e-01 84.8% 88.6%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.64 47.0 4.91e-01 97.8% 97.4%
3gygC01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 52.0 3.52e-01 100.0% 24.4%
3sk1A02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 44.0 4.10e-01 100.0% 60.3%
8b0qA01 3.30.420.340 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain 0.62 52.0 3.58e-01 100.0% 34.1%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 51.0 4.15e-01 100.0% 51.5%
3ejxA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.61 49.0 3.65e-01 100.0% 42.9%
4okcA01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.60 43.0 3.91e-01 95.7% 53.6%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.60 45.0 3.59e-01 100.0% 38.5%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 47.0 3.11e-01 87.0% 95.3%
4k22A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.58 48.0 3.78e-01 100.0% 59.3%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.57 42.0 4.26e-01 91.3% 95.7%
2wteA01 3.40.50.11700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 47.0 3.40e-01 95.7% 36.2%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.80e-01 95.7% 95.1%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 40.0 2.79e-01 76.1% 34.0%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.56 43.0 3.24e-01 100.0% 35.8%
3bn8A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.54 41.0 3.20e-01 89.1% 44.0%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 44.0 3.10e-01 91.3% 81.7%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.13e-01 100.0% 76.4%
1cjxA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 40.0 2.88e-01 89.1% 91.3%
6y48D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 2.65e-01 100.0% 61.4%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.52 32.0 3.38e-01 100.0% 58.5%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 38.0 2.36e-01 82.6% 80.5%
3h37A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 37.0 2.83e-01 84.8% 70.3%
1zswA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 44.0 2.98e-01 100.0% 40.4%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.51 36.0 2.77e-01 100.0% 31.6%
4u1eI00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.61e-01 100.0% 22.4%
1j6oA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.50 42.0 2.73e-01 100.0% 31.5%
1fl2A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 3.14e-01 100.0% 41.9%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1505155 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.84 69.0 6.56e-01 100.0% 76.8%
4025635 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.80 70.0 4.62e-01 100.0% 24.5%
3263505 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.77 66.0 4.35e-01 100.0% 23.6%
3492079 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.74 62.0 4.91e-01 97.8% 50.5%
4023763 2006.1.1.27 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › ISN1 0.73 64.0 3.92e-01 100.0% 22.5%
4033181 7528.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_II 0.72 61.0 4.66e-01 100.0% 80.9%
3788958 825.1.1.0 ↗ beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins 0.72 61.0 4.08e-01 100.0% 32.0%
3393851 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.72 60.0 4.32e-01 100.0% 33.1%
3930915 3105.1.1.4 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 0.71 60.0 4.18e-01 100.0% 37.6%
3501098 4126.1.1.1 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.71 62.0 3.83e-01 100.0% 52.5%
3620749 7528.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_II 0.71 60.0 4.46e-01 100.0% 76.8%
4369844 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.69 57.0 4.03e-01 97.8% 39.0%
4221106 2006.1.1.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.69 57.0 3.89e-01 100.0% 25.3%
3623960 3105.1.1.4 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 0.69 58.0 4.00e-01 100.0% 36.5%
4048173 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.68 56.0 4.21e-01 95.7% 50.8%
4273113 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.67 55.0 3.85e-01 97.8% 36.5%
5028250 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.67 57.0 4.46e-01 100.0% 58.1%
4417898 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.67 55.0 3.90e-01 97.8% 40.3%
3603282 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.67 56.0 3.96e-01 100.0% 40.0%
4630692 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.66 55.0 3.87e-01 97.8% 39.4%
4588602 3097.1.1.1 ↗ a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C 0.66 52.0 5.19e-01 93.5% 90.0%
1273610 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.65 52.0 3.82e-01 97.8% 41.5%
3954395 3097.1.1.0 ↗ a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y 0.64 51.0 4.96e-01 97.8% 90.9%
3837554 4126.1.1.1 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.64 54.0 3.53e-01 100.0% 55.8%
3736332 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.63 54.0 3.07e-01 100.0% 81.0%
4444380 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.63 52.0 3.74e-01 100.0% 40.0%
3961965 3097.1.1.1 ↗ a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C 0.62 52.0 4.74e-01 100.0% 76.9%
3417207 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 52.0 3.13e-01 100.0% 90.8%
4930189 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.62 49.0 4.63e-01 97.8% 86.7%
3236716 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.62 48.0 2.95e-01 100.0% 13.2%
3888662 5.1.4.546 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CFAP43_N 0.62 52.0 3.13e-01 100.0% 89.6%
4032931 286.1.1.5 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › CntK_N 0.61 48.0 3.78e-01 100.0% 49.6%
3601275 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 51.0 3.01e-01 100.0% 92.0%
3849060 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 51.0 3.04e-01 100.0% 90.8%
4288795 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.60 52.0 3.07e-01 100.0% 90.8%
4566218 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.60 48.0 3.66e-01 95.7% 48.0%
3487549 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 50.0 2.74e-01 100.0% 41.3%
3720248 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 50.0 2.80e-01 100.0% 44.0%
3687155 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 48.0 3.52e-01 100.0% 57.9%
3932473 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 50.0 2.97e-01 100.0% 81.3%
3229426 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 45.0 2.83e-01 91.3% 24.4%
3478725 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 48.0 2.96e-01 100.0% 35.7%
3781294 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 48.0 2.92e-01 100.0% 87.2%
3726265 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.57 43.0 3.14e-01 84.8% 56.3%
3603113 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.57 44.0 3.31e-01 100.0% 46.2%
4263214 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 44.0 4.20e-01 97.8% 93.3%
4232129 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 39.0 3.00e-01 78.3% 77.6%
2088430 3097.1.1.1 ↗ a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C 0.56 44.0 4.20e-01 100.0% 80.3%
3688807 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 46.0 3.57e-01 97.8% 60.0%
3282006 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 38.0 3.59e-01 76.1% 83.6%
5036257 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.53 43.0 3.19e-01 100.0% 67.9%
3716517 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.62e-01 100.0% 30.6%
5041214 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.53 43.0 3.13e-01 100.0% 62.7%
5040236 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.53 40.0 2.68e-01 97.8% 66.4%
4032501 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.52 41.0 3.52e-01 87.0% 82.7%
3615657 5.1.5.115 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_WDR3_2nd 0.52 44.0 2.67e-01 100.0% 29.0%
3613739 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 2.44e-01 100.0% 45.9%
3994170 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.83e-01 95.7% 36.2%
4847380 5.1.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › WD40 0.52 43.0 2.79e-01 100.0% 30.1%
4975199 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.51 35.0 2.37e-01 71.7% 16.6%
3717796 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 46.0 2.88e-01 100.0% 28.7%
3475647 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 45.0 2.80e-01 100.0% 28.8%
4683272 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.51 41.0 3.09e-01 100.0% 70.0%
3290305 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.51 36.0 3.36e-01 76.1% 85.0%
3882833 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 45.0 2.54e-01 100.0% 36.4%
4002724 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.51 39.0 2.43e-01 100.0% 25.7%
3595133 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.63e-01 100.0% 40.0%
5021156 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 43.0 2.85e-01 100.0% 38.0%
4533086 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 41.0 2.58e-01 100.0% 23.3%
3300781 5.1.4.226 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 0.50 44.0 2.77e-01 100.0% 45.8%
D2 high residues 59-132
PDB
D3 medium residues 145-235
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.71 51.0 3.68e-01 74.7% 44.0%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.69 56.0 3.83e-01 86.8% 56.6%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.69 48.0 5.04e-01 71.4% 81.7%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 52.0 3.83e-01 81.3% 81.3%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 45.0 4.74e-01 82.4% 76.5%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 45.0 3.87e-01 86.8% 44.7%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 40.0 4.49e-01 78.0% 80.3%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.64 50.0 4.17e-01 82.4% 77.4%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 41.0 3.66e-01 84.6% 46.1%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 46.0 3.94e-01 75.8% 52.1%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 41.0 3.62e-01 70.3% 46.6%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.63 44.0 4.05e-01 85.7% 56.8%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.62 49.0 4.09e-01 84.6% 92.9%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.60 48.0 4.16e-01 86.8% 70.2%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.39e-01 93.4% 41.8%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 49.0 3.41e-01 91.2% 40.4%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 40.0 3.65e-01 76.9% 52.9%
3auxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 41.0 2.70e-01 72.5% 29.6%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.58 50.0 3.38e-01 93.4% 52.6%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 3.30e-01 94.5% 52.2%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 3.39e-01 80.2% 58.5%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.57 50.0 3.54e-01 93.4% 42.2%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 4.05e-01 90.1% 75.4%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 48.0 3.45e-01 100.0% 70.2%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 40.0 3.37e-01 75.8% 45.9%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.56 46.0 3.98e-01 93.4% 69.3%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 49.0 4.59e-01 100.0% 87.6%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 41.0 2.96e-01 76.9% 52.4%
8f66A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 40.0 3.00e-01 75.8% 56.7%
1g0uE00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 40.0 2.94e-01 76.9% 53.5%
6qm7N00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 41.0 3.07e-01 80.2% 55.0%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.54 43.0 3.47e-01 86.8% 78.3%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 45.0 3.12e-01 93.4% 78.5%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 44.0 3.11e-01 93.4% 39.2%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.53 44.0 3.76e-01 90.1% 59.6%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 47.0 3.77e-01 100.0% 83.1%
2zutA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 29.0 3.36e-01 79.1% 79.7%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.20e-01 95.6% 52.3%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.52 42.0 3.39e-01 87.9% 51.4%
3dxpA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 38.0 3.84e-01 80.2% 98.9%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3218903 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.81 41.0 3.07e-01 75.8% 21.9%
4988423 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.80 42.0 4.55e-01 81.3% 60.0%
3704328 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.78 48.0 5.09e-01 79.1% 68.7%
4979564 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.77 40.0 4.53e-01 75.8% 65.7%
4950432 210.1.1.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.76 45.0 3.45e-01 75.8% 28.4%
3867103 3417.1.1.1 ↗ a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS 0.74 46.0 4.39e-01 78.0% 54.3%
4964966 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.70 51.0 4.22e-01 75.8% 77.4%
5044087 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.69 51.0 4.27e-01 76.9% 76.7%
3424575 220.1.1.153 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 0.67 48.0 4.72e-01 75.8% 85.0%
4031638 7089.1.1.1 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF1108 0.66 38.0 4.00e-01 75.8% 61.2%
3265841 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.66 42.0 4.14e-01 74.7% 60.0%
3250134 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 48.0 4.35e-01 90.1% 58.3%
3607579 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.65 47.0 4.36e-01 75.8% 63.2%
4956163 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.64 45.0 3.50e-01 92.3% 36.1%
3536576 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.64 44.0 4.58e-01 94.5% 76.5%
3965259 243.3.1.16 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY_2 0.63 40.0 4.40e-01 78.0% 79.7%
3609492 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.62 49.0 4.23e-01 83.5% 62.1%
3997716 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.62 38.0 4.15e-01 82.4% 74.7%
3690594 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 54.0 3.30e-01 94.5% 19.1%
5016360 5.1.5.231 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › SBBP 0.61 52.0 3.49e-01 95.6% 37.9%
5054272 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.61 43.0 2.56e-01 72.5% 19.1%
3597369 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.61 52.0 3.32e-01 94.5% 43.0%
3396749 5.1.5.73 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PEP5_VPS11_N 0.60 52.0 3.53e-01 95.6% 56.8%
5060431 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.60 44.0 2.84e-01 75.8% 28.9%
3587042 331.3.1.32 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3284 0.60 52.0 4.49e-01 100.0% 62.2%
3951220 5.1.3.22 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.60 52.0 3.48e-01 94.5% 43.1%
4936791 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.60 42.0 2.62e-01 72.5% 23.2%
3703598 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.60 46.0 4.02e-01 87.9% 54.8%
3769483 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 41.0 3.70e-01 71.4% 60.0%
5009130 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.60 42.0 2.76e-01 72.5% 30.1%
4400687 2004.1.1.782 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23, AAA_29, SbcC_Walker_B 0.60 42.0 2.63e-01 72.5% 23.6%
3546306 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.59 44.0 4.35e-01 92.3% 73.7%
5047088 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.59 51.0 3.85e-01 95.6% 55.9%
3804495 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 51.0 3.41e-01 94.5% 44.3%
4662378 1032.1.1.0 ↗ alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain 0.58 53.0 3.05e-01 100.0% 57.2%
4663376 3593.1.1.1 ↗ a+b complex topology › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › CagA_N 0.58 50.0 3.29e-01 95.6% 97.2%
3783021 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.58 42.0 3.87e-01 76.9% 95.0%
3916950 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.58 51.0 3.58e-01 96.7% 75.0%
3691332 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.57 49.0 3.19e-01 95.6% 42.9%
3218632 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.57 50.0 4.95e-01 97.8% 90.4%
5792 295.1.1.6 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.56 35.0 3.18e-01 72.5% 47.9%
5043752 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 3.36e-01 91.2% 33.5%
4262159 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.55 39.0 2.62e-01 74.7% 32.8%
4998236 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.54 42.0 2.70e-01 83.5% 20.9%
4423609 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 41.0 2.71e-01 79.1% 24.9%
3665959 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.54 47.0 3.17e-01 97.8% 27.0%
3164099 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 42.0 3.70e-01 82.4% 88.1%
5047148 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.53 41.0 2.82e-01 83.5% 28.2%
4952360 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.53 41.0 2.65e-01 83.5% 22.5%