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SRR1747030_scaffold_3_prodigal-single.1__X__X__00236
Bact-VirSRR1747030_scaffold_3_prodigal-single.1__X__X__00236
Identity
- Kingdom:
- phage
Quality
89.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 228-294
Domain cluster:
rep: MT104122.1__QIG62564.1__X__00050__D171-224
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bhkA00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.56 | 40.0 | 3.50e-01 | 76.1% | 84.8% |
| 4dt4A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 36.0 | 3.85e-01 | 80.6% | 77.2% |
| 4n4nB00 | 3.90.640.100 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.55 | 33.0 | 3.61e-01 | 70.1% | 71.4% |
| 2qetA02 | 4.10.470.10 | Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 | 0.55 | 38.0 | 3.63e-01 | 73.1% | 87.7% |
| 1hwmA02 | 4.10.470.10 | Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 | 0.55 | 38.0 | 3.54e-01 | 73.1% | 88.4% |
| 2jz6A01 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.55 | 35.0 | 3.95e-01 | 85.1% | 88.0% |
| 1yr1A00 | 3.40.50.10960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 43.0 | 3.65e-01 | 89.6% | 94.1% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 36.0 | 3.87e-01 | 86.6% | 80.7% |
| 4i8iA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.54 | 36.0 | 2.56e-01 | 71.6% | 30.9% |
| 3ktzA02 | 4.10.470.10 | Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 | 0.54 | 37.0 | 3.54e-01 | 73.1% | 86.7% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 35.0 | 3.94e-01 | 80.6% | 94.0% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 34.0 | 3.04e-01 | 82.1% | 44.1% |
| 2zr1A02 | 4.10.470.10 | Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 | 0.52 | 36.0 | 3.42e-01 | 73.1% | 86.7% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 3.99e-01 | 74.6% | 98.0% |
| 7razA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 3.68e-01 | 83.6% | 65.9% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 36.0 | 3.17e-01 | 76.1% | 93.3% |
| 1x31A02 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.50 | 40.0 | 2.56e-01 | 91.0% | 20.2% |
| 1r4kA01 | 2.170.260.10 | Mainly Beta › Beta Complex › paz domain › paz domain | 0.50 | 39.0 | 3.15e-01 | 85.1% | 67.4% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3605531 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.80 | 69.0 | 6.36e-01 | 94.0% | 81.0% |
| 3790904 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.64 | 37.0 | 3.93e-01 | 70.1% | 65.0% |
| 3939311 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.61 | 36.0 | 3.05e-01 | 74.6% | 35.5% |
| 3698817 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.59 | 45.0 | 3.93e-01 | 85.1% | 89.1% |
| 3557844 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.59 | 44.0 | 3.74e-01 | 82.1% | 84.3% |
| 3593102 | 1016.1.1.0 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 | 0.58 | 45.0 | 3.71e-01 | 85.1% | 74.6% |
| 4512385 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.58 | 40.0 | 3.02e-01 | 73.1% | 48.2% |
| 3985490 | 192.2.1.5 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 | 0.57 | 37.0 | 3.07e-01 | 73.1% | 36.3% |
| 4943204 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 43.0 | 3.66e-01 | 83.6% | 71.7% |
| 4951801 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.57 | 42.0 | 3.54e-01 | 80.6% | 100.0% |
| 3790375 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.57 | 38.0 | 3.14e-01 | 82.1% | 37.6% |
| 428210 | 3243.1.1.1 ↗ | alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD | 0.56 | 42.0 | 3.01e-01 | 83.6% | 33.6% |
| 3202023 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.56 | 41.0 | 3.29e-01 | 79.1% | 76.3% |
| 3783976 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.55 | 35.0 | 3.25e-01 | 82.1% | 48.9% |
| 4263412 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.55 | 42.0 | 3.20e-01 | 82.1% | 52.9% |
| 3588979 | 4.1.1.137 ↗ | beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor | 0.55 | 41.0 | 4.31e-01 | 82.1% | 91.5% |
| 3722860 | 2004.1.1.463 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin, Kinesin_assoc, Microtub_bd | 0.54 | 38.0 | 2.27e-01 | 73.1% | 10.9% |
| 3696633 | 3393.1.1.2 ↗ | extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc | 0.54 | 37.0 | 3.30e-01 | 71.6% | 52.6% |
| 3199081 | 620.1.1.4 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF1993 | 0.53 | 40.0 | 3.11e-01 | 83.6% | 81.2% |
| 4085433 | 6020.1.1.1 ↗ | a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C | 0.53 | 42.0 | 3.56e-01 | 91.0% | 74.2% |
| 5076401 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.52 | 39.0 | 3.93e-01 | 83.6% | 80.0% |
| 4409580 | 6020.1.1.1 ↗ | a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C | 0.52 | 41.0 | 3.42e-01 | 92.5% | 77.0% |
| 4016140 | 620.1.1.4 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF1993 | 0.52 | 39.0 | 2.96e-01 | 83.6% | 76.6% |
| 4269801 | 6020.1.1.1 ↗ | a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C | 0.51 | 43.0 | 3.56e-01 | 97.0% | 70.8% |
| 3290393 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.51 | 30.0 | 2.01e-01 | 74.6% | 12.5% |
| 5010604 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.51 | 36.0 | 2.53e-01 | 76.1% | 36.4% |
| 4026678 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.51 | 38.0 | 3.85e-01 | 83.6% | 80.0% |
| 4210622 | 6020.1.1.1 ↗ | a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C | 0.51 | 43.0 | 3.57e-01 | 97.0% | 72.8% |
| 5046839 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.51 | 39.0 | 3.30e-01 | 85.1% | 98.3% |
| 5000494 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.51 | 40.0 | 2.76e-01 | 85.1% | 58.7% |
| 3184752 | 620.1.1.4 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF1993 | 0.51 | 39.0 | 2.96e-01 | 85.1% | 80.6% |
D2
high
residues 297-425
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00294__D106-220
D3
medium
residues 9-79
Domain cluster:
rep: MT104122.1__QIG62564.1__X__00050__D171-224
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14311.13 best | DUF4379 | 27.0 | 5.60e-06 | 71.8% | 80.4% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xr7F02 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 43.0 | 4.04e-01 | 77.5% | 75.6% |
| 1yr1A00 | 3.40.50.10960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 40.0 | 3.47e-01 | 100.0% | 48.7% |
| 3uyjA00 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.54 | 37.0 | 2.63e-01 | 98.6% | 21.8% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 33.0 | 2.94e-01 | 78.9% | 40.4% |
| 3uh0A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.53 | 44.0 | 3.73e-01 | 94.4% | 75.8% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 36.0 | 4.13e-01 | 88.7% | 100.0% |
| 1eqtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 30.0 | 3.10e-01 | 74.6% | 56.7% |
| 2kk2A00 | 1.20.50.40 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › | 0.52 | 35.0 | 3.76e-01 | 70.4% | 88.5% |
| 8a57D02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 3.33e-01 | 100.0% | 78.5% |
| 4iy0A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.51 | 35.0 | 2.82e-01 | 91.5% | 33.6% |
| 2dx6A00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.50 | 41.0 | 3.28e-01 | 94.4% | 76.6% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3592370 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.76 | 62.0 | 5.19e-01 | 100.0% | 52.5% |
| 3598807 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 58.0 | 5.94e-01 | 100.0% | 87.0% |
| 3593102 | 1016.1.1.0 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 | 0.65 | 52.0 | 4.23e-01 | 85.9% | 73.8% |
| 3698817 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.65 | 51.0 | 4.42e-01 | 85.9% | 88.2% |
| 4255495 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.60 | 42.0 | 2.90e-01 | 73.2% | 70.4% |
| 3990293 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.59 | 34.0 | 3.81e-01 | 78.9% | 72.7% |
| 3722860 | 2004.1.1.463 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin, Kinesin_assoc, Microtub_bd | 0.56 | 41.0 | 2.47e-01 | 77.5% | 12.8% |
| 3696633 | 3393.1.1.2 ↗ | extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc | 0.55 | 40.0 | 3.68e-01 | 77.5% | 61.1% |
| 4528028 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.55 | 47.0 | 3.49e-01 | 100.0% | 43.0% |
| 3765555 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.52 | 43.0 | 3.70e-01 | 90.1% | 84.5% |
| 3304627 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.51 | 37.0 | 4.12e-01 | 93.0% | 100.0% |
| 3587259 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.51 | 41.0 | 3.81e-01 | 88.7% | 74.4% |
D4
medium
residues 125-227
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14311.13 best | DUF4379 | 24.9 | 2.70e-05 | 55.3% | 91.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3605531 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.71 | 48.0 | 5.28e-01 | 74.8% | 84.5% |
| 3592370 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.70 | 51.0 | 4.86e-01 | 75.7% | 90.8% |