←Back to structures
SRR1747035_scaffold_2_prodigal-single.1__X__X__00023
Bact-VirSRR1747035_scaffold_2_prodigal-single.1__X__X__00023
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-98
Domain cluster:
rep: OP596614.1__WAX24421.1__X__00048__D31-103
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vbkA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.68 | 55.0 | 3.40e-01 | 100.0% | 14.1% |
| 2vm9A02 | 2.60.40.2080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 59.0 | 5.51e-01 | 100.0% | 90.8% |
| 3gwqA01 | 2.40.37.20 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain | 0.65 | 57.0 | 4.51e-01 | 100.0% | 62.1% |
| 2wcoA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.65 | 48.0 | 4.32e-01 | 100.0% | 55.7% |
| 3l81A02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.64 | 52.0 | 4.68e-01 | 100.0% | 64.5% |
| 6cl5A01 | 2.60.40.3940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 56.0 | 5.24e-01 | 100.0% | 81.4% |
| 6hlxA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.63 | 56.0 | 4.57e-01 | 98.8% | 73.6% |
| 2v72A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 53.0 | 4.56e-01 | 100.0% | 95.6% |
| 4gaaA01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.60 | 50.0 | 3.86e-01 | 100.0% | 38.9% |
| 4ei0A01 | 2.60.40.3550 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 | 0.60 | 52.0 | 4.43e-01 | 100.0% | 58.2% |
| 7nitA06 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.60 | 53.0 | 4.18e-01 | 100.0% | 93.6% |
| 1o59A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.60 | 52.0 | 4.43e-01 | 100.0% | 97.8% |
| 4cuaA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.60 | 52.0 | 4.10e-01 | 100.0% | 61.2% |
| 5j7mA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 49.0 | 4.23e-01 | 100.0% | 60.7% |
| 5zbeA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 49.0 | 4.41e-01 | 100.0% | 69.2% |
| 2vpvA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 49.0 | 4.64e-01 | 100.0% | 79.8% |
| 3q2wA05 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.57 | 49.0 | 4.59e-01 | 100.0% | 82.0% |
| 1vj2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 48.0 | 4.25e-01 | 100.0% | 64.0% |
| 3ebrA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 47.0 | 3.78e-01 | 100.0% | 46.8% |
| 1wmdA02 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 48.0 | 4.33e-01 | 100.0% | 100.0% |
| 3winE03 | 2.60.120.1090 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 49.0 | 4.44e-01 | 100.0% | 97.3% |
| 3am2A02 | 2.60.120.1050 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 48.0 | 4.32e-01 | 100.0% | 89.7% |
| 4indA03 | 2.60.120.1330 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 49.0 | 4.29e-01 | 100.0% | 91.6% |
| 3cjxA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 46.0 | 3.75e-01 | 100.0% | 49.3% |
| 2b8mA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 46.0 | 4.17e-01 | 100.0% | 67.9% |
| 1nlqE00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.54 | 48.0 | 4.52e-01 | 100.0% | 98.0% |
| 5zm4B00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.54 | 48.0 | 3.30e-01 | 100.0% | 39.8% |
| 2pndA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 4.10e-01 | 100.0% | 83.2% |
| 3t30C00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.54 | 47.0 | 4.51e-01 | 100.0% | 96.8% |
| 2y7lA02 | 2.60.40.2430 | Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain | 0.54 | 46.0 | 3.86e-01 | 100.0% | 55.6% |
| 2oa2A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 49.0 | 4.24e-01 | 100.0% | 66.1% |
| 4llfD02 | 2.60.40.4030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 46.0 | 4.10e-01 | 100.0% | 89.2% |
| 2q1fA04 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.54 | 47.0 | 3.91e-01 | 98.8% | 64.6% |
| 2bnmA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 47.0 | 4.18e-01 | 100.0% | 67.5% |
| 5v00B01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 39.0 | 3.90e-01 | 100.0% | 75.6% |
| 2gy5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 4.19e-01 | 100.0% | 83.8% |
| 2yvsA02 | 3.30.70.2560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 34.0 | 3.87e-01 | 80.0% | 91.5% |
| 5fljA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 46.0 | 3.53e-01 | 100.0% | 42.9% |
| 8h68A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.51 | 46.0 | 3.34e-01 | 100.0% | 41.4% |
| 7ekdA01 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.51 | 44.0 | 2.98e-01 | 100.0% | 29.5% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081149 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.77 | 62.0 | 6.56e-01 | 100.0% | 100.0% |
| 3588730 | 4182.1.1.0 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like | 0.70 | 58.0 | 5.50e-01 | 100.0% | 75.8% |
| 5042048 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.69 | 56.0 | 4.14e-01 | 100.0% | 34.3% |
| 3338010 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.69 | 55.0 | 5.70e-01 | 100.0% | 93.3% |
| 3992869 | 11.1.5.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF7808 | 0.68 | 60.0 | 5.38e-01 | 100.0% | 93.0% |
| 3239995 | 11.21.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › DUF7808 | 0.68 | 60.0 | 5.60e-01 | 100.0% | 95.0% |
| 3649226 | 207.2.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 | 0.68 | 54.0 | 3.43e-01 | 100.0% | 17.1% |
| 3964117 | 4182.1.1.3 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C | 0.67 | 58.0 | 5.48e-01 | 100.0% | 81.1% |
| 3792868 | 11.1.5.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF7808 | 0.67 | 58.0 | 5.10e-01 | 100.0% | 82.3% |
| 3969203 | 4182.1.1.0 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like | 0.66 | 59.0 | 5.27e-01 | 100.0% | 70.4% |
| 3604177 | 3386.2.1.0 ↗ | beta sandwiches › gp9 C-terminal domain-like › gp10 domain 2 and domain 3 › gp10 domain 2 and domain 3 | 0.66 | 53.0 | 5.58e-01 | 95.0% | 100.0% |
| 3604637 | 4182.1.1.3 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C | 0.66 | 59.0 | 5.23e-01 | 100.0% | 70.4% |
| 2491354 | 4182.1.1.3 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C | 0.66 | 55.0 | 5.18e-01 | 100.0% | 77.1% |
| 3498512 | 12.1.1.44 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_5_C | 0.66 | 55.0 | 5.20e-01 | 100.0% | 77.9% |
| 2581320 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 57.0 | 4.97e-01 | 100.0% | 92.0% |
| 4326586 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.65 | 56.0 | 4.98e-01 | 100.0% | 95.0% |
| 3706855 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.64 | 58.0 | 4.80e-01 | 100.0% | 90.0% |
| 3280514 | 1.1.7.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › D-ser_dehydrat | 0.64 | 56.0 | 4.57e-01 | 100.0% | 52.3% |
| 2448383 | 4182.1.1.3 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C | 0.64 | 56.0 | 4.94e-01 | 100.0% | 68.0% |
| 3622189 | 11.1.1.297 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 | 0.63 | 52.0 | 4.29e-01 | 100.0% | 49.3% |
| 4996444 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.62 | 48.0 | 4.31e-01 | 100.0% | 59.1% |
| 4546062 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.62 | 55.0 | 4.00e-01 | 100.0% | 36.0% |
| 3854078 | 12.5.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS | 0.62 | 55.0 | 4.26e-01 | 100.0% | 47.2% |
| 3178469 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.60 | 52.0 | 4.38e-01 | 100.0% | 80.0% |
| 3252659 | 11.1.1.802 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 | 0.60 | 53.0 | 5.03e-01 | 100.0% | 85.3% |
| 3517115 | 11.1.5.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GBS104-like_Ig | 0.59 | 51.0 | 3.84e-01 | 100.0% | 37.2% |
| 5018614 | 304.8.1.17 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › A9CJY8-like_N | 0.59 | 35.0 | 3.99e-01 | 75.0% | 83.6% |
| 4608515 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 51.0 | 4.27e-01 | 100.0% | 75.9% |
| 3275875 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 52.0 | 4.75e-01 | 100.0% | 91.4% |
| 3838433 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.57 | 45.0 | 4.15e-01 | 100.0% | 66.7% |
| 5005659 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.57 | 50.0 | 4.34e-01 | 100.0% | 72.0% |
| 3212025 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 49.0 | 4.59e-01 | 100.0% | 97.0% |
| 1180035 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.56 | 48.0 | 3.97e-01 | 100.0% | 53.2% |
| 5039872 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.56 | 48.0 | 4.54e-01 | 100.0% | 80.0% |
| 4625449 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 48.0 | 4.63e-01 | 97.5% | 97.8% |
| 3389545 | 10.32.1.235 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MBF2 | 0.56 | 46.0 | 4.52e-01 | 100.0% | 85.6% |
| 4951746 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.56 | 48.0 | 4.44e-01 | 100.0% | 99.0% |
| 3864111 | 12.5.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 | 0.55 | 48.0 | 4.03e-01 | 100.0% | 57.9% |
| 3999209 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 46.0 | 4.06e-01 | 100.0% | 63.3% |
| 4846224 | 929.1.1.2 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin › PCSK9_C1 | 0.54 | 43.0 | 4.22e-01 | 100.0% | 83.0% |
| 3994329 | 10.32.1.233 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Hemicentin | 0.54 | 46.0 | 4.37e-01 | 100.0% | 79.0% |
| 3536574 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.53 | 45.0 | 4.30e-01 | 100.0% | 80.0% |
| 3958055 | 846.1.1.0 ↗ | a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) | 0.53 | 45.0 | 3.94e-01 | 100.0% | 99.2% |
| 3939754 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.53 | 46.0 | 4.14e-01 | 100.0% | 84.3% |
| 3938151 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.53 | 46.0 | 4.22e-01 | 100.0% | 89.1% |
| 3861624 | 10.21.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 | 0.53 | 44.0 | 3.96e-01 | 100.0% | 89.6% |
| 3241599 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.52 | 45.0 | 4.15e-01 | 100.0% | 85.5% |
| None | — | 0.52 | 45.0 | 3.35e-01 | 100.0% | 49.5% | |
| 3932914 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.52 | 45.0 | 4.20e-01 | 100.0% | 93.3% |
| 4945026 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 45.0 | 4.09e-01 | 100.0% | 75.5% |
| 2883141 | 325.1.5.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal protein L10e › Ribosomal_L16 | 0.52 | 39.0 | 3.38e-01 | 83.7% | 73.5% |
| None | — | 0.51 | 43.0 | 3.30e-01 | 100.0% | 52.6% | |
| 3931328 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.51 | 45.0 | 4.02e-01 | 100.0% | 84.3% |
| 3571841 | 10.21.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 | 0.51 | 43.0 | 3.18e-01 | 100.0% | 45.2% |
| 3992792 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 43.0 | 3.57e-01 | 100.0% | 96.1% |
| 3282905 | 4085.2.1.1 ↗ | alpha arrays › RbcX-like › uncharacterized protein LPG2149 › uncharacterized protein LPG2149 › Helicase_C_3 | 0.50 | 38.0 | 3.79e-01 | 80.0% | 77.6% |
| 3279474 | 241.11.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR | 0.50 | 38.0 | 3.40e-01 | 81.2% | 72.2% |
| 3927274 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.50 | 43.0 | 3.76e-01 | 100.0% | 76.9% |