Back to structures

SRR1747035_scaffold_2_prodigal-single.1__X__X__00097

Bact-Vir

SRR1747035_scaffold_2_prodigal-single.1__X__X__00097

Identity

Kingdom:
phage

Quality

76.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-104
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00436.32 best SSB 29.4 9.00e-07 93.0% 77.9%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.95 74.0 7.52e-01 100.0% 82.5%
1z9fA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.94 73.0 7.75e-01 100.0% 89.9%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.91 77.0 7.65e-01 100.0% 85.6%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.90 72.0 7.63e-01 100.0% 92.2%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.90 80.0 7.94e-01 100.0% 90.2%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.89 80.0 7.64e-01 100.0% 83.8%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.89 85.0 8.36e-01 100.0% 95.2%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.87 70.0 6.82e-01 100.0% 77.1%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.87 70.0 7.37e-01 100.0% 92.2%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.86 81.0 7.78e-01 100.0% 91.2%
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.85 71.0 7.19e-01 100.0% 88.0%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.83 69.0 7.23e-01 100.0% 94.5%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.83 69.0 7.23e-01 99.0% 95.6%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.83 62.0 6.06e-01 100.0% 71.6%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 70.0 7.09e-01 100.0% 90.9%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 70.0 6.99e-01 100.0% 88.3%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 69.0 6.97e-01 100.0% 90.8%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 69.0 6.68e-01 100.0% 86.4%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 60.0 6.42e-01 100.0% 96.5%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 55.0 5.34e-01 100.0% 68.8%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 55.0 5.56e-01 100.0% 76.5%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 67.0 6.45e-01 100.0% 85.7%
2nttA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 47.0 5.48e-01 100.0% 94.3%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 62.0 6.11e-01 100.0% 86.7%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 50.0 5.50e-01 100.0% 92.6%
4hikA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 64.0 5.61e-01 100.0% 76.8%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 55.0 5.59e-01 100.0% 88.8%
2b39A13 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 54.0 4.87e-01 100.0% 64.7%
1xweA01 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 52.0 4.62e-01 100.0% 62.9%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 34.0 3.89e-01 92.0% 71.1%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 50.0 5.14e-01 98.0% 89.7%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 53.0 5.11e-01 100.0% 87.0%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 48.0 4.41e-01 100.0% 73.7%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.55 26.0 3.33e-01 100.0% 77.4%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.69e-01 84.0% 52.0%
2c4mA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.50 41.0 2.67e-01 88.0% 56.8%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1890287 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.95 74.0 7.52e-01 100.0% 82.5%
4032979 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.93 86.0 8.27e-01 100.0% 87.3%
4277262 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.92 87.0 8.12e-01 100.0% 83.1%
4232994 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.92 84.0 8.10e-01 100.0% 86.4%
174115 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.91 73.0 7.88e-01 100.0% 96.5%
5078989 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.91 71.0 6.26e-01 100.0% 59.3%
159268 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.91 79.0 5.96e-01 100.0% 43.7%
4170378 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.90 86.0 8.11e-01 100.0% 86.1%
3375524 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.90 80.0 7.41e-01 100.0% 76.7%
4137219 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.89 80.0 8.09e-01 100.0% 94.0%
4478491 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.89 84.0 8.27e-01 100.0% 94.3%
3839607 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.89 85.0 7.94e-01 100.0% 84.7%
2845667 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.89 76.0 7.40e-01 100.0% 82.6%
4044404 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.88 84.0 8.27e-01 100.0% 96.2%
3814285 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.88 80.0 7.75e-01 100.0% 87.3%
4296288 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.88 82.0 8.08e-01 100.0% 93.3%
4025160 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.87 83.0 7.56e-01 100.0% 86.4%
3616890 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.85 79.0 7.50e-01 100.0% 85.2%
294 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.85 81.0 6.99e-01 100.0% 71.0%
4047115 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.85 76.0 7.66e-01 100.0% 95.0%
3473720 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.85 76.0 7.37e-01 100.0% 86.4%
3924081 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.85 80.0 7.03e-01 100.0% 72.1%
3491964 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.84 80.0 7.18e-01 100.0% 90.8%
3608487 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 74.0 7.27e-01 100.0% 88.6%
3215667 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.82 78.0 7.30e-01 100.0% 85.0%
2035523 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.82 76.0 7.32e-01 100.0% 88.4%
4327241 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.82 72.0 7.34e-01 100.0% 93.9%
4068016 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.82 74.0 7.31e-01 100.0% 90.5%
3488538 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 67.0 6.10e-01 100.0% 66.9%
4122961 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.82 73.0 7.35e-01 100.0% 94.0%
3448049 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.81 73.0 7.14e-01 100.0% 88.6%
3365669 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.81 73.0 7.04e-01 100.0% 86.4%
3600626 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 71.0 7.16e-01 100.0% 93.0%
381191 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.81 70.0 6.99e-01 100.0% 88.3%
222748 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.81 67.0 7.06e-01 97.0% 95.6%
4264144 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.81 71.0 7.01e-01 100.0% 87.6%
3707760 2.1.1.225 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.80 76.0 7.05e-01 100.0% 87.5%
4238279 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.80 75.0 7.16e-01 100.0% 87.0%
5016563 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 67.0 6.29e-01 100.0% 74.2%
3244059 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.80 64.0 6.32e-01 100.0% 80.0%
3255112 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.80 70.0 6.63e-01 100.0% 80.9%
3507463 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 70.0 6.63e-01 100.0% 80.9%
3599731 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 75.0 5.94e-01 100.0% 61.4%
5000768 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.79 68.0 6.51e-01 100.0% 80.0%
4626934 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 72.0 7.14e-01 100.0% 92.4%
3701262 2.1.1.225 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.78 73.0 6.64e-01 100.0% 86.2%
3392389 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 72.0 6.69e-01 100.0% 81.7%
3650641 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.78 69.0 6.16e-01 100.0% 69.6%
3788866 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.78 68.0 6.03e-01 100.0% 66.4%
3470958 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 72.0 5.72e-01 100.0% 65.8%
317 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.77 69.0 6.68e-01 100.0% 86.4%
3783432 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.77 70.0 6.93e-01 100.0% 93.3%
4024258 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 71.0 6.65e-01 100.0% 82.5%
4084495 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.76 68.0 6.70e-01 100.0% 90.5%
3467519 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.76 67.0 6.61e-01 93.0% 88.6%
3690510 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.75 68.0 6.60e-01 100.0% 88.2%
3712376 2.1.1.225 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.75 70.0 6.59e-01 100.0% 84.2%
3829265 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.75 71.0 6.64e-01 100.0% 93.3%
3599571 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 70.0 6.66e-01 100.0% 87.8%
3413189 2.1.1.141 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB 0.75 70.0 5.81e-01 100.0% 62.4%
4127161 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 64.0 6.49e-01 100.0% 93.0%
3595817 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 70.0 6.73e-01 100.0% 92.7%
3263786 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 65.0 5.79e-01 100.0% 69.6%
3544107 2.1.1.288 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF4502 0.72 61.0 6.26e-01 100.0% 95.8%
3880555 2.1.1.290 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29066 0.71 67.0 5.90e-01 100.0% 73.6%
3856954 375.1.1.308 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4502 0.71 60.0 6.17e-01 100.0% 95.8%
3612689 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 64.0 6.23e-01 100.0% 97.3%
3177392 2.1.1.52 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.70 58.0 4.62e-01 100.0% 46.3%
3931232 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 53.0 4.89e-01 100.0% 65.6%
3677650 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 62.0 4.24e-01 100.0% 41.8%
3948921 2.1.1.139 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Slp 0.64 54.0 5.02e-01 100.0% 72.8%
3814481 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 58.0 5.17e-01 100.0% 77.1%
3515333 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 44.0 4.69e-01 94.0% 80.0%
3929663 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 55.0 5.01e-01 100.0% 74.6%
3230278 2.3.1.0 beta barrels › OB-fold › TIMP-like › TIMP-like 0.61 53.0 4.52e-01 100.0% 59.7%
3192492 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.59 48.0 3.28e-01 86.0% 53.0%
3707549 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.58 47.0 3.09e-01 87.0% 64.1%
4955607 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.57 39.0 3.00e-01 96.0% 32.6%
3509864 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 40.0 3.73e-01 73.0% 96.0%
4951664 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 37.0 3.31e-01 70.0% 92.0%
4939324 5.1.4.559 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_propel 0.53 41.0 2.87e-01 83.0% 57.2%
None 0.52 35.0 2.54e-01 94.0% 24.8%
3718042 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.52 47.0 3.09e-01 100.0% 84.0%
3188394 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.51 35.0 3.31e-01 100.0% 58.3%