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SRR1747035_scaffold_2_prodigal-single.1__X__X__00104

Bact-Vir

SRR1747035_scaffold_2_prodigal-single.1__X__X__00104

Identity

Kingdom:
phage

Quality

86.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-36
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n4fA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.75 62.0 3.66e-01 100.0% 12.5%
3k9gA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 58.0 3.58e-01 100.0% 15.9%
1q35A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.72 54.0 3.67e-01 100.0% 21.2%
4i1dC01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.72 55.0 3.60e-01 100.0% 19.3%
1u0tB01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.70 52.0 3.63e-01 100.0% 24.5%
3huuC02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 56.0 3.90e-01 100.0% 27.1%
1h0hA03 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.68 56.0 3.37e-01 100.0% 15.6%
7ml0001 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 50.0 3.01e-01 81.8% 100.0%
3bzcA03 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.68 53.0 3.73e-01 100.0% 27.3%
3g85A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 49.0 3.57e-01 100.0% 30.2%
3n8hA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 54.0 3.50e-01 97.0% 85.2%
3eyeA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.67 51.0 3.49e-01 100.0% 21.6%
3o4fH02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 55.0 3.43e-01 100.0% 20.6%
5e7qA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.67 49.0 2.76e-01 78.8% 33.6%
2ielA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 52.0 3.65e-01 100.0% 25.8%
6b10A00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.66 50.0 2.97e-01 100.0% 10.1%
2gh9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 49.0 3.23e-01 100.0% 18.3%
6f2mA01 3.30.200.190 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.66 55.0 4.05e-01 100.0% 66.3%
3c8eA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.66 52.0 3.65e-01 100.0% 29.1%
1h9cA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 50.0 3.77e-01 100.0% 34.0%
2hnhA01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.65 50.0 3.06e-01 100.0% 18.9%
5ci5A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 48.0 3.20e-01 100.0% 19.0%
1a8lA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 53.0 3.81e-01 100.0% 31.6%
1vx2M00 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.65 51.0 3.63e-01 100.0% 25.8%
3d02A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 52.0 3.45e-01 100.0% 20.9%
5zctA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 47.0 3.51e-01 100.0% 28.1%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.65 47.0 3.83e-01 100.0% 38.4%
3kn3B01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 50.0 3.60e-01 100.0% 28.3%
4q5tA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 47.0 3.31e-01 100.0% 23.1%
2hpiA01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.65 52.0 3.14e-01 100.0% 12.4%
2f9aA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.65 44.0 2.50e-01 72.7% 11.4%
2yvqA00 3.40.50.1380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylglyoxal synthase-like domain 0.64 52.0 3.60e-01 100.0% 76.1%
1u6tA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 48.0 3.50e-01 100.0% 30.6%
4hw8A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 46.0 3.11e-01 100.0% 18.0%
2nx2A00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 51.0 3.33e-01 100.0% 48.3%
4c0rA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 49.0 3.66e-01 100.0% 31.4%
2xd3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 47.0 3.02e-01 81.8% 28.2%
1ixcA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 44.0 3.50e-01 100.0% 34.0%
5elmA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 45.0 3.47e-01 100.0% 71.4%
2qtlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.62 50.0 3.39e-01 100.0% 25.8%
1atgA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 48.0 3.35e-01 84.8% 82.8%
3mebA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.62 47.0 2.84e-01 100.0% 13.6%
7dkaA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 47.0 3.06e-01 97.0% 16.9%
5lstA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 49.0 3.12e-01 100.0% 87.4%
2nzxA02 3.40.50.11650 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycosyl transferase family 10, N-terminal domain 0.61 47.0 3.39e-01 100.0% 30.8%
1u3dA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 46.0 3.14e-01 100.0% 71.4%
2qi2A03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.60 43.0 3.44e-01 100.0% 34.0%
5uh0A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 46.0 3.60e-01 100.0% 35.5%
5exeA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.59 48.0 2.89e-01 84.8% 41.6%
4n82B00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.59 45.0 3.11e-01 100.0% 29.4%
3up9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 47.0 3.24e-01 100.0% 23.9%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.59 49.0 3.82e-01 100.0% 73.1%
2dhmA01 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.58 44.0 3.49e-01 100.0% 45.6%
5u95B01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 46.0 3.06e-01 100.0% 19.2%
3ehdA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 43.0 3.05e-01 100.0% 36.9%
3oc4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 44.0 3.22e-01 100.0% 53.3%
2nxoA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 43.0 3.41e-01 100.0% 35.1%
5oesA04 3.40.50.1760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic 0.57 38.0 2.95e-01 100.0% 28.2%
3fj1A01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.56 40.0 2.67e-01 100.0% 17.1%
4ntlA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 37.0 2.79e-01 100.0% 24.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016498 2007.1.7.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH 0.72 55.0 3.57e-01 100.0% 19.4%
4992949 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.71 53.0 4.06e-01 100.0% 35.0%
4942752 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.71 56.0 4.02e-01 100.0% 32.2%
4939902 2003.2.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 0.71 56.0 4.00e-01 100.0% 29.1%
4004161 2007.1.16.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn 0.71 55.0 3.85e-01 100.0% 26.9%
5001633 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.71 54.0 3.49e-01 100.0% 17.9%
3396851 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.70 53.0 3.45e-01 100.0% 17.4%
4033596 7523.1.1.3 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.70 53.0 3.15e-01 81.8% 13.5%
4338175 2485.1.1.27 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › KaiB 0.70 55.0 4.02e-01 100.0% 34.5%
None — 0.70 51.0 3.48e-01 100.0% 20.6%
3486960 2007.1.16.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 0.69 52.0 3.48e-01 100.0% 21.2%
3927256 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.69 54.0 3.38e-01 100.0% 30.0%
3282946 2007.1.5.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like 0.68 53.0 3.89e-01 100.0% 30.9%
4355990 7565.1.1.1 ↗ a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.68 51.0 3.49e-01 100.0% 23.2%
3969431 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.68 49.0 3.50e-01 100.0% 23.7%
4495050 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.68 54.0 3.88e-01 100.0% 30.9%
3652829 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.68 52.0 3.58e-01 100.0% 26.4%
4456325 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.67 49.0 3.62e-01 100.0% 30.0%
3602782 2007.1.16.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn 0.67 52.0 3.79e-01 100.0% 31.3%
1806519 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.67 50.0 4.26e-01 100.0% 47.9%
3866272 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.67 51.0 3.68e-01 100.0% 29.2%
5079103 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.67 51.0 3.36e-01 84.8% 38.6%
4285250 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.67 49.0 3.54e-01 100.0% 28.5%
3286679 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.66 50.0 3.79e-01 100.0% 35.0%
4057204 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.66 48.0 3.43e-01 100.0% 26.7%
4093291 2007.1.6.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH 0.65 49.0 3.71e-01 100.0% 57.1%
5029017 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.64 48.0 3.61e-01 100.0% 32.7%
4028550 2003.1.10.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › GSH_synthase 0.64 47.0 3.30e-01 100.0% 22.8%
5075157 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.63 46.0 3.45e-01 100.0% 28.7%
4040789 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.63 45.0 3.33e-01 100.0% 25.8%
3866779 2485.1.1.34 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx 0.63 47.0 3.78e-01 100.0% 40.9%
4970683 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.63 47.0 3.25e-01 100.0% 23.2%
4190437 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.63 46.0 3.51e-01 100.0% 30.9%
4065499 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.62 44.0 3.37e-01 100.0% 31.3%
4352402 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.62 46.0 3.24e-01 100.0% 24.3%
4987797 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.62 44.0 3.39e-01 100.0% 31.8%
3064547 2485.1.1.27 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › KaiB 0.62 46.0 3.78e-01 100.0% 43.0%
4939277 2006.1.4.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.62 44.0 3.04e-01 100.0% 66.5%
4975427 2007.15.1.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr 0.61 43.0 3.18e-01 100.0% 27.7%
3691936 2007.1.6.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH 0.61 47.0 3.23e-01 100.0% 22.6%
5000172 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.60 43.0 3.47e-01 100.0% 36.8%
4069758 2007.1.6.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH 0.60 47.0 3.42e-01 100.0% 26.9%
4981628 2007.1.16.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn 0.60 47.0 3.42e-01 100.0% 30.0%
2644982 7523.1.1.8 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.60 47.0 3.44e-01 100.0% 28.4%
2601634 3244.1.1.1 ↗ extended segments › Alpha-synuclein › Alpha-synuclein › Alpha-synuclein › Synuclein 0.59 46.0 3.42e-01 100.0% 28.2%
3641252 60.1.1.8 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › SPOC_AIPP2 0.59 43.0 2.94e-01 97.0% 18.8%
3729034 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.59 43.0 2.73e-01 100.0% 14.1%
3924007 2007.9.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain 0.59 49.0 3.25e-01 93.9% 52.5%
2816401 7523.1.1.1 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.59 45.0 3.39e-01 100.0% 30.3%
4476434 2007.6.1.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › bact-PGI_C 0.59 46.0 3.08e-01 100.0% 21.4%
3287064 7574.1.1.0 ↗ a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) 0.59 42.0 2.65e-01 100.0% 13.5%
5076560 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.59 45.0 3.25e-01 100.0% 25.4%
3516237 2003.1.10.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Ins134_P3_kin_N 0.58 40.0 3.39e-01 100.0% 40.0%
4652977 2485.1.1.27 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › KaiB 0.57 39.0 2.90e-01 84.8% 25.2%
4405362 2002.1.1.102 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.57 48.0 2.95e-01 100.0% 13.5%
4174421 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 45.0 3.49e-01 100.0% 34.7%
D2 medium residues 39-76
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ob9B02 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.71 56.0 4.26e-01 100.0% 35.3%
3cngA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.69 52.0 5.34e-01 89.5% 100.0%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.69 49.0 4.87e-01 76.3% 79.5%
4bbrM00 1.10.472.170 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.69 51.0 3.29e-01 86.8% 16.6%
2m38A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 2.93e-01 78.9% 53.3%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 45.0 3.87e-01 92.1% 75.7%
4mtlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 40.0 2.64e-01 81.6% 47.1%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 43.0 2.61e-01 89.5% 63.0%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 39.0 2.53e-01 76.3% 37.0%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 3.07e-01 100.0% 31.0%
4ddpA00 1.10.418.40 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 0.55 38.0 2.52e-01 76.3% 23.6%
1ckeA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 2.84e-01 100.0% 27.8%
1nnxA00 2.40.50.200 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold 0.54 38.0 2.94e-01 73.7% 49.5%
2r8rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.61e-01 92.1% 25.8%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 2.81e-01 89.5% 87.0%
2yrtA00 4.10.1130.20 Few Secondary Structures › Irregular › btk motif of tyrosine-protein kinase itk › 0.51 35.0 2.94e-01 81.6% 36.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4369866 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.83 63.0 6.28e-01 86.8% 80.0%
5070299 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 63.0 6.28e-01 86.8% 82.5%
4438701 375.1.1.272 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26372 0.78 58.0 5.41e-01 86.8% 65.3%
4276264 375.8.1.5 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › PF26372 0.76 55.0 5.32e-01 86.8% 68.9%
4854353 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.75 54.0 5.00e-01 84.2% 58.5%
5061079 4294.1.1.13 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB 0.74 57.0 5.40e-01 89.5% 71.1%
3666644 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.74 50.0 5.17e-01 100.0% 77.1%
5058552 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.73 54.0 5.05e-01 89.5% 62.0%
4932308 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.73 54.0 5.58e-01 86.8% 91.4%
4027519 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.73 56.0 5.74e-01 94.7% 97.1%
3967552 375.1.1.71 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2387 0.73 55.0 5.27e-01 86.8% 73.3%
3585826 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 57.0 5.70e-01 92.1% 97.5%
5061081 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.72 55.0 5.09e-01 89.5% 64.0%
3566388 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.72 50.0 4.83e-01 73.7% 72.1%
3231897 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.72 53.0 3.09e-01 81.6% 20.3%
3997794 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 59.0 4.77e-01 100.0% 63.7%
4989647 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.70 57.0 5.14e-01 100.0% 65.5%
5061790 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 50.0 4.83e-01 89.5% 68.9%
4937577 375.1.1.53 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Nudix_N_2 0.69 49.0 5.01e-01 89.5% 91.4%
4992408 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 52.0 5.03e-01 89.5% 80.0%
4932987 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 49.0 5.00e-01 81.6% 97.1%
4962408 375.1.1.353 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF28084 0.67 48.0 4.98e-01 86.8% 88.6%
4425056 64.1.1.4 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_1 0.67 47.0 4.86e-01 100.0% 85.7%
3254253 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.66 49.0 3.38e-01 89.5% 21.9%
4982858 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 54.0 3.80e-01 100.0% 28.9%
3232261 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.65 49.0 3.31e-01 84.2% 60.0%
3482645 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.65 46.0 4.70e-01 86.8% 88.6%
3654449 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 43.0 4.55e-01 86.8% 89.7%
3861324 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.65 46.0 4.34e-01 78.9% 64.0%
5084051 375.8.1.7 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › TRAM 0.64 46.0 4.66e-01 86.8% 88.6%
4990102 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 48.0 4.66e-01 97.4% 71.1%
5028402 3087.1.2.1 ↗ few secondary structure elements › CDGSH iron-sulfur domains › CDGSH iron-sulfur domains › Type 3, 4, and 7 › zf-CDGSH 0.64 46.0 4.12e-01 78.9% 58.2%
4012484 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.63 52.0 3.54e-01 100.0% 43.9%
3621451 398.1.1.0 ↗ few secondary structure elements › Btk/CHORD zinc fingers › Btk/CHORD zinc fingers › Btk/CHORD zinc fingers 0.63 44.0 4.53e-01 81.6% 82.9%
3503021 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.62 46.0 4.71e-01 86.8% 91.4%
4964214 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.62 47.0 4.35e-01 89.5% 61.8%
3080538 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.62 49.0 3.80e-01 100.0% 61.4%
4951495 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.62 52.0 5.17e-01 100.0% 92.5%
4049910 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.61 45.0 4.33e-01 81.6% 68.9%
4171942 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.61 47.0 3.68e-01 97.4% 67.3%
3744039 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 46.0 2.71e-01 94.7% 17.4%
3528941 398.1.1.0 ↗ few secondary structure elements › Btk/CHORD zinc fingers › Btk/CHORD zinc fingers › Btk/CHORD zinc fingers 0.59 42.0 4.34e-01 81.6% 85.7%
3938963 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 41.0 4.26e-01 76.3% 85.7%
3781329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 3.93e-01 100.0% 52.5%
4011287 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 49.0 4.09e-01 97.4% 64.3%
3924082 386.1.1.64 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_12 0.59 49.0 3.99e-01 97.4% 49.3%
3271024 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.58 42.0 2.77e-01 81.6% 49.5%
4368318 2003.1.5.145 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RLMG_N 0.57 38.0 2.52e-01 71.1% 50.5%
3269220 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.56 39.0 2.46e-01 71.1% 12.8%
3270036 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.56 38.0 3.39e-01 78.9% 38.2%
3474634 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.56 39.0 3.94e-01 100.0% 72.5%
4967881 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.56 38.0 3.49e-01 73.7% 53.7%
4310743 375.1.1.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.55 41.0 4.01e-01 89.5% 86.7%
3709220 4138.1.1.0 ↗ few secondary structure elements › Granulin repeat › Granulin repeat › Granulin repeat 0.53 41.0 3.70e-01 81.6% 69.1%
3873729 376.1.4.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.53 38.0 3.44e-01 94.7% 54.3%
3728487 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.50 34.0 2.29e-01 71.1% 16.8%