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SRR1747035_scaffold_2_prodigal-single.1__X__X__00107

Bact-Vir

SRR1747035_scaffold_2_prodigal-single.1__X__X__00107

Identity

Kingdom:
phage

Quality

85.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-112
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 29.0 9.00e-07 40.9% 67.4%
D2 high residues 120-190
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kcrA00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.58 28.0 3.06e-01 74.6% 49.2%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.58 38.0 3.94e-01 83.1% 72.7%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.57 37.0 3.67e-01 80.3% 61.8%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 36.0 3.38e-01 87.3% 53.5%
5hkxA04 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 31.0 3.55e-01 78.9% 88.6%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.29e-01 77.5% 85.0%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.22e-01 85.9% 44.4%
3r5dA02 3.30.60.70 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes 0.53 30.0 3.47e-01 90.1% 92.7%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 31.0 3.66e-01 71.8% 93.3%
1xkzC00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 37.0 2.70e-01 80.3% 67.3%
2bayE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 33.0 3.54e-01 74.6% 78.0%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.27e-01 76.1% 93.3%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.10e-01 76.1% 81.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3877714 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.66 37.0 3.63e-01 93.0% 48.8%
3389022 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.61 38.0 4.36e-01 91.5% 88.0%
3400352 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.61 35.0 3.90e-01 73.2% 74.1%
3445679 375.1.1.51 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.61 34.0 4.07e-01 73.2% 83.3%
3518250 822.2.1.0 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like 0.60 31.0 3.81e-01 73.2% 85.0%
4084680 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.58 44.0 4.21e-01 81.7% 83.5%
3411730 386.1.1.131 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_OTU1_C 0.55 33.0 3.82e-01 90.1% 93.3%
4566976 375.14.2.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) 0.54 32.0 3.65e-01 81.7% 100.0%
3624908 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 43.0 3.96e-01 85.9% 77.8%
3956578 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.54 40.0 3.21e-01 81.7% 78.1%
4600774 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 4.07e-01 73.2% 100.0%
3607436 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.53 38.0 3.48e-01 77.5% 56.8%
3935404 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.53 38.0 3.53e-01 76.1% 73.3%
4025004 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.52 33.0 3.42e-01 73.2% 67.1%
3998575 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 43.0 3.98e-01 97.2% 98.9%
4635237 12.1.1.52 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GLGE_C 0.51 31.0 2.78e-01 76.1% 42.0%
3805637 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.50 32.0 3.10e-01 73.2% 56.2%
3190961 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 37.0 3.77e-01 80.3% 97.1%