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SRR1747035_scaffold_2_prodigal-single.1__X__X__00137
Bact-VirSRR1747035_scaffold_2_prodigal-single.1__X__X__00137
Identity
- Kingdom:
- phage
Quality
72.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-147
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i0wD02 | 2.60.120.1290 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 39.0 | 4.10e-01 | 93.0% | 56.2% |
| 6mw4A01 | 2.60.120.1290 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 36.0 | 3.81e-01 | 92.3% | 58.5% |
| 4ew7A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 44.0 | 4.83e-01 | 92.3% | 86.7% |
| 1hxdA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 40.0 | 3.63e-01 | 100.0% | 49.2% |
| 1kyfA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.57 | 37.0 | 4.12e-01 | 98.6% | 81.4% |
| 3eehA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 42.0 | 4.58e-01 | 95.1% | 96.6% |
| 1stzA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 36.0 | 3.61e-01 | 88.7% | 62.4% |
| 3ewkA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 40.0 | 4.59e-01 | 91.5% | 100.0% |
| 1oj5A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 39.0 | 4.46e-01 | 89.4% | 100.0% |
| 1fx3B00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.54 | 31.0 | 3.08e-01 | 97.9% | 53.0% |
| 1vjhA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 34.0 | 3.72e-01 | 93.7% | 75.0% |
| 5u3fB01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.53 | 41.0 | 4.15e-01 | 100.0% | 81.4% |
| 5svgC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 41.0 | 4.46e-01 | 96.5% | 95.9% |
| 2qkpD00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 39.0 | 4.03e-01 | 93.0% | 80.6% |
| 3mxqC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 40.0 | 4.21e-01 | 95.8% | 88.8% |
| 4f3lA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 40.0 | 4.25e-01 | 96.5% | 91.8% |
| 2kdkA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 39.0 | 4.32e-01 | 95.8% | 99.1% |
| 3cloC01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 44.0 | 3.98e-01 | 96.5% | 66.3% |
| 7a6pB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 40.0 | 4.08e-01 | 93.0% | 82.6% |
| 1eq6A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.52 | 38.0 | 3.41e-01 | 96.5% | 56.1% |
| 3lyxB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 37.0 | 3.98e-01 | 93.0% | 88.3% |
| 2pslA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 43.0 | 3.77e-01 | 92.3% | 84.8% |
| 1wa9A02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 39.0 | 3.68e-01 | 97.2% | 68.5% |
| 2dd7A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.50 | 42.0 | 3.72e-01 | 91.5% | 86.4% |
| 2c9jA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.50 | 43.0 | 3.75e-01 | 92.3% | 86.4% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4195296 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.66 | 42.0 | 4.73e-01 | 93.0% | 82.7% |
| 3596155 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 36.0 | 3.97e-01 | 89.4% | 67.0% |
| 5051461 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 39.0 | 3.67e-01 | 92.3% | 51.8% |
| 3272081 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 40.0 | 3.83e-01 | 93.7% | 55.9% |
| 3182544 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.61 | 35.0 | 3.53e-01 | 99.3% | 57.1% |
| 1271600 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.60 | 43.0 | 4.83e-01 | 93.0% | 96.3% |
| 3962288 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.60 | 41.0 | 4.28e-01 | 97.9% | 75.4% |
| 3241603 | 223.2.1.37 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like | 0.58 | 40.0 | 3.80e-01 | 95.8% | 60.6% |
| 4927645 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 42.0 | 4.62e-01 | 93.7% | 94.8% |
| 3937193 | 223.2.1.37 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like | 0.56 | 38.0 | 3.59e-01 | 95.1% | 56.0% |
| 3648327 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.56 | 40.0 | 4.07e-01 | 97.2% | 74.3% |
| 3788150 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.55 | 39.0 | 4.22e-01 | 93.7% | 87.5% |
| 3616864 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.55 | 39.0 | 4.38e-01 | 95.8% | 100.0% |
| 3918300 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.55 | 40.0 | 4.15e-01 | 95.8% | 82.3% |
| 6304 | 331.3.1.1 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 | 0.54 | 34.0 | 3.72e-01 | 93.7% | 75.0% |
| 4946841 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 39.0 | 4.20e-01 | 93.0% | 87.5% |
| 4945033 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 39.0 | 4.07e-01 | 93.0% | 81.5% |
| 4938249 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.53 | 39.0 | 3.99e-01 | 93.0% | 77.1% |
| 4415556 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.53 | 37.0 | 3.34e-01 | 95.1% | 49.0% |
| 4960095 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.53 | 41.0 | 4.29e-01 | 92.3% | 88.5% |
| 3930230 | 331.4.1.5 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1_BRSK | 0.52 | 33.0 | 3.62e-01 | 93.0% | 77.4% |
| 4216413 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.52 | 40.0 | 4.22e-01 | 93.0% | 89.2% |
| 4026379 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.51 | 38.0 | 3.75e-01 | 98.6% | 73.3% |
D2
high
residues 148-238