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SRR1747035_scaffold_2_prodigal-single.1__X__X__00240
Bact-VirSRR1747035_scaffold_2_prodigal-single.1__X__X__00240
Identity
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-84
Domain cluster:
rep: IMGVR_UViG_3300013426_000003-3300013426-Ga0116649_100004337__D413-479
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dzkA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 52.0 | 4.89e-01 | 96.7% | 96.1% |
| 2kvzA00 | 3.10.20.320 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Putative peptidoglycan bound protein (lpxtg motif) | 0.63 | 53.0 | 4.83e-01 | 100.0% | 75.3% |
| 3vqiA01 | 3.10.20.620 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.62 | 53.0 | 4.48e-01 | 100.0% | 85.2% |
| 7sbiB01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 52.0 | 4.90e-01 | 96.7% | 97.3% |
| 1wgrA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 50.0 | 4.59e-01 | 95.1% | 96.3% |
| 6qlyA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 50.0 | 4.64e-01 | 100.0% | 98.8% |
| 3m62B00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 48.0 | 4.65e-01 | 100.0% | 98.6% |
| 6larC01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 44.0 | 4.34e-01 | 96.7% | 97.1% |
| 2x8xX03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.52 | 43.0 | 4.02e-01 | 100.0% | 94.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3425922 | 3121.1.1.8 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA1_3_Toc75 | 0.53 | 43.0 | 3.96e-01 | 100.0% | 92.2% |
| 4059008 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.53 | 39.0 | 3.90e-01 | 95.1% | 76.9% |
| 3432937 | 3121.1.1.8 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA1_3_Toc75 | 0.52 | 42.0 | 3.92e-01 | 100.0% | 97.6% |
| 4956032 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.51 | 38.0 | 3.82e-01 | 96.7% | 81.7% |
| 4950806 | 4.6.1.8 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › WH_Lhr | 0.51 | 37.0 | 3.92e-01 | 96.7% | 89.1% |
| 5037211 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.51 | 39.0 | 3.87e-01 | 96.7% | 81.5% |
| 5040460 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.51 | 38.0 | 3.67e-01 | 96.7% | 70.3% |
D2
high
residues 89-247
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13306.13 best | LRR_5 | 66.2 | 3.70e-18 | 43.4% | 48.8% |
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ojuA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.72 | 54.0 | 5.75e-01 | 88.1% | 85.9% |
| 2waoA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.71 | 40.0 | 4.77e-01 | 79.2% | 80.2% |
| 7vt4A01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.68 | 41.0 | 4.53e-01 | 92.5% | 74.2% |
| 6qe7A01 | 3.90.182.10 | Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 | 0.67 | 40.0 | 4.27e-01 | 79.9% | 67.6% |
| 2pfwA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.67 | 31.0 | 3.69e-01 | 91.2% | 61.3% |
| 2waaA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.65 | 37.0 | 4.20e-01 | 78.6% | 72.4% |
| 2gu9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.65 | 34.0 | 4.03e-01 | 78.0% | 74.8% |
| 6qdiA02 | 3.90.182.10 | Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 | 0.65 | 38.0 | 4.11e-01 | 79.2% | 67.2% |
| 1gwmA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.64 | 40.0 | 4.15e-01 | 87.4% | 66.0% |
| 4cp6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.63 | 53.0 | 3.85e-01 | 88.1% | 34.3% |
| 1tg7A05 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.63 | 45.0 | 4.34e-01 | 83.0% | 65.3% |
| 1vj2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 29.0 | 3.32e-01 | 88.7% | 58.8% |
| 4gt6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.61 | 53.0 | 3.90e-01 | 94.3% | 38.0% |
| 4mzuF02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 30.0 | 3.14e-01 | 79.9% | 48.6% |
| 2bv4A00 | 2.60.120.400 | Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin | 0.61 | 39.0 | 4.57e-01 | 73.0% | 91.2% |
| 4fs7A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.60 | 54.0 | 3.94e-01 | 93.7% | 39.2% |
| 2xwtC00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.60 | 49.0 | 4.27e-01 | 86.2% | 65.0% |
| 4h09D00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.60 | 53.0 | 3.95e-01 | 94.3% | 50.4% |
| 5by5A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 29.0 | 3.36e-01 | 77.4% | 60.9% |
| 2vveA01 | 2.60.120.770 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 25.0 | 3.22e-01 | 81.8% | 66.7% |
| 3w5nA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 46.0 | 4.57e-01 | 98.7% | 79.6% |
| 5a3lA00 | 2.60.120.1560 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 39.0 | 3.55e-01 | 79.9% | 55.0% |
| 3w5mA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 45.0 | 4.16e-01 | 86.2% | 83.2% |
| 5fq0A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 28.0 | 3.36e-01 | 79.9% | 72.7% |
| 1n26A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 29.0 | 3.54e-01 | 83.0% | 79.8% |
| 1o4tA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 28.0 | 3.25e-01 | 81.1% | 67.0% |
| 1sq4A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 28.0 | 2.98e-01 | 81.8% | 53.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1297113 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.72 | 54.0 | 5.73e-01 | 88.1% | 85.3% |
| 4928383 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.71 | 35.0 | 4.61e-01 | 77.4% | 84.4% |
| 3245210 | 10.32.1.213 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 | 0.68 | 45.0 | 4.96e-01 | 81.1% | 82.3% |
| 165179 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.67 | 30.0 | 3.56e-01 | 91.8% | 59.1% |
| 4654760 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.67 | 39.0 | 4.11e-01 | 78.6% | 62.8% |
| 4990903 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.66 | 34.0 | 4.03e-01 | 81.1% | 72.1% |
| 2576217 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.66 | 54.0 | 4.82e-01 | 84.3% | 64.0% |
| 1156538 | 10.32.1.56 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CE2_N | 0.65 | 37.0 | 4.20e-01 | 78.6% | 72.4% |
| 1877808 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.63 | 29.0 | 3.56e-01 | 76.7% | 66.3% |
| 1501314 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.63 | 53.0 | 3.85e-01 | 88.1% | 34.3% |
| 3969466 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.62 | 27.0 | 3.12e-01 | 91.8% | 52.5% |
| 3956637 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.61 | 34.0 | 3.65e-01 | 91.2% | 61.5% |
| 1281087 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.60 | 54.0 | 3.94e-01 | 93.7% | 39.2% |
| 1281127 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.60 | 48.0 | 4.75e-01 | 84.3% | 88.8% |
| 5033803 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.60 | 53.0 | 4.68e-01 | 93.1% | 70.5% |
| 1295939 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.60 | 53.0 | 3.95e-01 | 94.3% | 50.4% |
| 4027527 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.59 | 30.0 | 3.93e-01 | 97.5% | 89.4% |
| 4148563 | 207.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 | 0.58 | 52.0 | 3.64e-01 | 94.3% | 32.2% |
| 3971446 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.58 | 31.0 | 3.57e-01 | 80.5% | 68.7% |
| 3973758 | 10.12.1.98 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer | 0.58 | 32.0 | 3.69e-01 | 91.8% | 72.8% |
| 3838063 | 10.12.1.98 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer | 0.58 | 33.0 | 3.64e-01 | 92.5% | 68.0% |
| 4259112 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.57 | 33.0 | 3.50e-01 | 94.3% | 61.4% |
| 1030916 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.56 | 28.0 | 3.37e-01 | 81.1% | 70.2% |
| 5003035 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 42.0 | 4.15e-01 | 93.7% | 72.1% |
| 4963763 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.54 | 25.0 | 3.04e-01 | 76.7% | 65.0% |
| 1180014 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.54 | 28.0 | 3.20e-01 | 84.3% | 67.5% |
| 3251202 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 36.0 | 3.96e-01 | 81.8% | 83.8% |
| 5057219 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.53 | 31.0 | 3.70e-01 | 73.6% | 85.6% |
| 3774484 | 604.1.1.167 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AMH_N | 0.53 | 35.0 | 3.40e-01 | 90.6% | 57.8% |
| 3233083 | 11.2.1.85 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_N_APX | 0.53 | 36.0 | 4.20e-01 | 71.7% | 96.5% |
| 3969412 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.53 | 27.0 | 3.08e-01 | 81.1% | 63.5% |
| 4963436 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.53 | 28.0 | 3.26e-01 | 71.1% | 71.8% |
| 5061863 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.52 | 27.0 | 3.10e-01 | 82.4% | 66.4% |
| 4174964 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.52 | 31.0 | 2.99e-01 | 73.0% | 49.7% |
| 5031628 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.52 | 27.0 | 3.11e-01 | 81.8% | 64.2% |
| 4942033 | 10.12.1.98 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer | 0.52 | 32.0 | 3.77e-01 | 89.9% | 86.0% |