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SRR1747035_scaffold_3_prodigal-single.1__X__X__00069

Bact-Vir

SRR1747035_scaffold_3_prodigal-single.1__X__X__00069

Identity

Kingdom:
phage

Quality

80.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-48
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.67 57.0 5.21e-01 95.7% 87.1%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 44.0 4.46e-01 97.8% 72.3%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 49.0 4.42e-01 95.7% 64.6%
1j3mA00 3.30.310.70 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain 0.60 49.0 3.71e-01 100.0% 42.5%
4y93A03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 45.0 3.14e-01 100.0% 27.0%
2wsiA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 43.0 2.71e-01 97.8% 16.1%
4mqvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.75e-01 95.7% 81.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3645932 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.64 52.0 3.34e-01 91.3% 22.6%
3759250 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.57 41.0 4.15e-01 93.5% 84.4%
4955193 2003.1.5.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.56 48.0 2.89e-01 100.0% 21.1%