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SRR1747035_scaffold_3_prodigal-single.1__X__X__00070
Bact-VirSRR1747035_scaffold_3_prodigal-single.1__X__X__00070
Identity
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-112
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 49.0 | 5.83e-01 | 90.4% | 100.0% |
| 1xl3C00 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.74 | 45.0 | 4.58e-01 | 86.2% | 62.6% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.73 | 49.0 | 4.34e-01 | 98.9% | 48.1% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 45.0 | 5.49e-01 | 91.5% | 100.0% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 49.0 | 5.38e-01 | 92.6% | 88.3% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 43.0 | 4.20e-01 | 88.3% | 56.7% |
| 5b2nA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.67 | 58.0 | 4.24e-01 | 95.7% | 78.7% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.67 | 47.0 | 5.08e-01 | 94.7% | 88.5% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.66 | 40.0 | 4.88e-01 | 84.0% | 98.3% |
| 1jogA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.65 | 45.0 | 4.02e-01 | 94.7% | 49.6% |
| 1yf2A02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.63 | 56.0 | 5.37e-01 | 98.9% | 84.1% |
| 2mysA06 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 44.0 | 3.98e-01 | 72.3% | 74.0% |
| 2rd9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.62 | 50.0 | 4.12e-01 | 88.3% | 60.0% |
| 4iggB06 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 52.0 | 4.06e-01 | 94.7% | 63.7% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 53.0 | 5.21e-01 | 98.9% | 86.4% |
| 1gkuB06 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.61 | 42.0 | 3.60e-01 | 71.3% | 66.0% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 56.0 | 5.30e-01 | 100.0% | 86.2% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 54.0 | 5.19e-01 | 98.9% | 86.8% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 47.0 | 4.56e-01 | 86.2% | 83.5% |
| 1kgqA01 | 1.10.166.10 | Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain | 0.58 | 30.0 | 3.48e-01 | 71.3% | 68.6% |
| 1xfjA00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.56 | 41.0 | 2.98e-01 | 74.5% | 55.5% |
| 2xcqA02 | 3.90.199.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 | 0.54 | 42.0 | 3.11e-01 | 85.1% | 79.0% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.62e-01 | 70.2% | 80.0% |
| 2wdqD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.54 | 38.0 | 3.71e-01 | 88.3% | 66.7% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 43.0 | 3.71e-01 | 86.2% | 97.2% |
| 1x1aA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.39e-01 | 83.0% | 55.4% |
| 1qgiA01 | 3.30.386.10 | Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 | 0.53 | 39.0 | 3.44e-01 | 78.7% | 91.2% |
| 2qksA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 46.0 | 4.47e-01 | 94.7% | 86.8% |
| 2j5bA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.53 | 45.0 | 4.15e-01 | 94.7% | 76.0% |
| 3qa8A04 | 1.20.1270.250 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 47.0 | 3.48e-01 | 97.9% | 59.7% |
| 1gzsB00 | 1.10.4120.10 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain | 0.52 | 36.0 | 3.02e-01 | 76.6% | 41.2% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.51 | 41.0 | 3.06e-01 | 87.2% | 92.4% |
| 3k4oA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.51 | 39.0 | 2.95e-01 | 84.0% | 94.6% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.87e-01 | 93.6% | 80.6% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5077504 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.79 | 45.0 | 2.99e-01 | 87.2% | 16.2% |
| 4984959 | 3758.1.1.113 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Rad50_zn_hook | 0.71 | 49.0 | 3.28e-01 | 100.0% | 20.0% |
| 3656716 | 3755.3.1.498 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF31016 | 0.71 | 63.0 | 5.34e-01 | 100.0% | 60.7% |
| 5046472 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.70 | 44.0 | 4.43e-01 | 84.0% | 63.2% |
| 5053119 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 46.0 | 4.28e-01 | 70.2% | 69.2% |
| 4996751 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.65 | 39.0 | 3.82e-01 | 90.4% | 53.3% |
| 4055098 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.65 | 46.0 | 4.18e-01 | 100.0% | 55.2% |
| 3903618 | 219.1.1.54 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 | 0.63 | 40.0 | 2.80e-01 | 88.3% | 20.7% |
| 4991135 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.63 | 48.0 | 4.66e-01 | 100.0% | 73.3% |
| 3686623 | 601.1.1.90 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF3433 | 0.61 | 52.0 | 4.10e-01 | 94.7% | 83.4% |
| 3945104 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.61 | 54.0 | 4.07e-01 | 97.9% | 84.9% |
| 60305 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.61 | 56.0 | 5.36e-01 | 100.0% | 88.7% |
| 1722503 | 101.1.2.129 ↗ | alpha arrays › HTH › HTH › winged helix domain › BpuJI_N | 0.60 | 42.0 | 3.82e-01 | 72.3% | 72.7% |
| 3550136 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.60 | 50.0 | 4.70e-01 | 98.9% | 75.7% |
| 3344777 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.60 | 42.0 | 3.73e-01 | 92.6% | 52.3% |
| 4954786 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.60 | 48.0 | 5.01e-01 | 96.8% | 95.3% |
| 3413217 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.60 | 53.0 | 5.00e-01 | 100.0% | 80.9% |
| 3632380 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.59 | 48.0 | 3.67e-01 | 90.4% | 58.3% |
| 4259368 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.59 | 54.0 | 4.97e-01 | 100.0% | 79.2% |
| 3528628 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.59 | 48.0 | 3.48e-01 | 88.3% | 52.6% |
| 4984189 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.59 | 39.0 | 3.39e-01 | 93.6% | 44.1% |
| 3575264 | 604.12.1.61 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Clc-like | 0.58 | 49.0 | 4.57e-01 | 96.8% | 73.9% |
| 3593339 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.58 | 51.0 | 4.77e-01 | 95.7% | 78.3% |
| 4060154 | 4974.1.1.0 ↗ | alpha bundles › CRISPR-Cas system first helical domain › CRISPR-Cas system first helical domain › CRISPR-Cas system RNase C2c2 first helical domain | 0.58 | 53.0 | 4.16e-01 | 100.0% | 84.7% |
| 4381440 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.58 | 52.0 | 4.88e-01 | 100.0% | 82.6% |
| 3929606 | 5054.1.1.1 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan | 0.58 | 51.0 | 4.48e-01 | 94.7% | 65.9% |
| 3642639 | 3922.1.1.269 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook | 0.58 | 44.0 | 4.29e-01 | 100.0% | 73.3% |
| 3202986 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.58 | 52.0 | 4.75e-01 | 100.0% | 76.0% |
| 3916642 | 192.2.1.56 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 | 0.58 | 51.0 | 4.42e-01 | 100.0% | 62.7% |
| 4271212 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.58 | 52.0 | 4.76e-01 | 100.0% | 77.2% |
| 3637098 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.57 | 51.0 | 4.55e-01 | 100.0% | 69.9% |
| 5014330 | 148.1.3.402 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rad50_zn_hook | 0.57 | 49.0 | 4.72e-01 | 100.0% | 81.8% |
| 3189488 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.57 | 43.0 | 4.09e-01 | 98.9% | 68.2% |
| 3787269 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.57 | 50.0 | 4.82e-01 | 100.0% | 84.5% |
| 5044560 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 47.0 | 3.65e-01 | 94.7% | 57.4% |
| 3671252 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 43.0 | 4.16e-01 | 80.9% | 98.1% |
| 5078448 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.57 | 51.0 | 4.85e-01 | 100.0% | 89.1% |
| 3206842 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 47.0 | 3.47e-01 | 95.7% | 68.2% |
| 4607020 | 192.2.1.3 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Rad50_zn_hook | 0.56 | 50.0 | 4.45e-01 | 100.0% | 69.6% |
| 4181293 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.56 | 49.0 | 4.74e-01 | 100.0% | 86.4% |
| 3364631 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.56 | 49.0 | 4.62e-01 | 97.9% | 93.9% |
| 5035493 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.56 | 49.0 | 4.80e-01 | 100.0% | 88.6% |
| 3913300 | 3755.3.1.303 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th | 0.56 | 50.0 | 4.31e-01 | 100.0% | 74.0% |
| 4940192 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.56 | 49.0 | 4.63e-01 | 100.0% | 81.6% |
| 5030054 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 38.0 | 3.67e-01 | 71.3% | 73.6% |
| 3220314 | 5054.1.1.1 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan | 0.55 | 49.0 | 4.18e-01 | 96.8% | 64.7% |
| 3943611 | 601.27.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › DUF3053 | 0.55 | 48.0 | 3.76e-01 | 97.9% | 46.8% |
| 5061540 | 2498.1.1.147 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF7897 | 0.54 | 41.0 | 2.87e-01 | 83.0% | 36.1% |
| 4019703 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.53 | 44.0 | 3.59e-01 | 89.4% | 77.7% |
| 3860220 | 4156.1.1.2 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C | 0.53 | 41.0 | 3.33e-01 | 86.2% | 72.8% |
| 4995144 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 42.0 | 3.41e-01 | 87.2% | 63.9% |
| 3498969 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.52 | 39.0 | 2.91e-01 | 80.9% | 83.4% |
| 4979715 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.51 | 41.0 | 3.56e-01 | 88.3% | 76.0% |
| 4949230 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.50 | 38.0 | 2.87e-01 | 83.0% | 54.1% |