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SRR1747035_scaffold_3_prodigal-single.1__X__X__00208
Bact-VirSRR1747035_scaffold_3_prodigal-single.1__X__X__00208
Identity
- Kingdom:
- phage
Quality
88.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-77
Domain cluster:
rep: NC_019538.1__YP_007010153.1__F485_gp168__00127__D8-74
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.66 | 50.0 | 4.78e-01 | 83.3% | 76.6% |
| 2j7qA00 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.62 | 52.0 | 3.64e-01 | 98.5% | 35.5% |
| 1w0pA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 54.0 | 3.93e-01 | 98.5% | 56.5% |
| 4gp0B02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.61 | 45.0 | 3.78e-01 | 81.8% | 100.0% |
| 4ml0B00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.61 | 41.0 | 3.75e-01 | 71.2% | 53.3% |
| 1xkiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 48.0 | 3.98e-01 | 90.9% | 100.0% |
| 6gfaA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.60 | 35.0 | 3.77e-01 | 75.8% | 67.9% |
| 1w0pA03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 53.0 | 3.82e-01 | 98.5% | 52.9% |
| 3mmyA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 46.0 | 2.95e-01 | 86.4% | 87.9% |
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.59 | 48.0 | 3.52e-01 | 90.9% | 97.8% |
| 4gzvA00 | 2.40.128.490 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 | 0.59 | 50.0 | 3.99e-01 | 97.0% | 96.4% |
| 2dk7A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.58 | 41.0 | 4.05e-01 | 77.3% | 72.6% |
| 3ow8C00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 45.0 | 2.96e-01 | 86.4% | 90.7% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.56 | 40.0 | 3.76e-01 | 77.3% | 98.9% |
| 7zoiA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 37.0 | 3.15e-01 | 71.2% | 100.0% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 39.0 | 3.55e-01 | 74.2% | 70.0% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 43.0 | 4.57e-01 | 92.4% | 100.0% |
| 2rjqA02 | 3.40.1620.60 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.55 | 38.0 | 3.69e-01 | 77.3% | 65.8% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 47.0 | 3.97e-01 | 98.5% | 88.6% |
| 4pbpA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 47.0 | 3.38e-01 | 100.0% | 51.0% |
| 2i2lA01 | 2.10.70.50 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.54 | 38.0 | 4.17e-01 | 74.2% | 100.0% |
| 2zwaA02 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.53 | 38.0 | 2.54e-01 | 78.8% | 52.3% |
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.53 | 38.0 | 3.28e-01 | 75.8% | 59.4% |
| 3asiA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 46.0 | 3.42e-01 | 100.0% | 61.2% |
| 3nbxX04 | 2.40.128.430 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 41.0 | 3.69e-01 | 93.9% | 95.3% |
| 2rbcA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 37.0 | 2.55e-01 | 78.8% | 41.2% |
| 4j87A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 42.0 | 2.72e-01 | 89.4% | 89.2% |
| 1e5tA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.52 | 40.0 | 2.57e-01 | 84.8% | 21.5% |
| 2bbuA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 43.0 | 3.42e-01 | 97.0% | 95.5% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.52 | 38.0 | 4.09e-01 | 86.4% | 94.5% |
| 6w0pA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 37.0 | 2.26e-01 | 74.2% | 95.4% |
| 5wt7A00 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.52 | 36.0 | 2.94e-01 | 84.8% | 35.0% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.52 | 38.0 | 3.71e-01 | 83.3% | 97.5% |
| 1mdaH00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 38.0 | 2.48e-01 | 83.3% | 66.0% |
| 2o62A02 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 42.0 | 3.44e-01 | 97.0% | 97.1% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.51 | 43.0 | 2.94e-01 | 95.5% | 50.2% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.51 | 39.0 | 3.38e-01 | 84.8% | 91.7% |
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.51 | 36.0 | 3.07e-01 | 77.3% | 86.1% |
| 1xipA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 39.0 | 2.53e-01 | 87.9% | 82.6% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3983052 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.69 | 54.0 | 3.64e-01 | 86.4% | 54.8% |
| 136649 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.66 | 50.0 | 4.50e-01 | 83.3% | 62.1% |
| 3405373 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.64 | 46.0 | 2.86e-01 | 75.8% | 35.0% |
| 3984933 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.63 | 47.0 | 4.34e-01 | 83.3% | 67.8% |
| 4024671 | 4041.1.1.0 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase | 0.62 | 50.0 | 3.65e-01 | 87.9% | 94.4% |
| 3422058 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.62 | 44.0 | 2.96e-01 | 75.8% | 35.4% |
| 1443135 | 3321.1.1.2 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › DNA_pol_B_N | 0.61 | 44.0 | 3.67e-01 | 75.8% | 78.8% |
| 3574696 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 44.0 | 2.72e-01 | 77.3% | 53.4% |
| 3599654 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 45.0 | 2.52e-01 | 78.8% | 21.1% |
| 3733709 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 45.0 | 2.73e-01 | 80.3% | 30.9% |
| 3561693 | 77.1.1.2 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 | 0.60 | 44.0 | 3.36e-01 | 77.3% | 45.3% |
| 3597662 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 43.0 | 2.69e-01 | 78.8% | 27.2% |
| 3520119 | 5.1.4.48 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 | 0.59 | 43.0 | 2.64e-01 | 77.3% | 82.5% |
| 3254597 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 42.0 | 2.71e-01 | 75.8% | 58.8% |
| 4029821 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.58 | 42.0 | 2.97e-01 | 78.8% | 43.5% |
| 3976834 | 4.1.1.156 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2158 | 0.58 | 40.0 | 4.35e-01 | 90.9% | 100.0% |
| 4937478 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.58 | 50.0 | 3.52e-01 | 98.5% | 51.0% |
| 3994625 | 5.1.4.30 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LLGL | 0.57 | 42.0 | 2.67e-01 | 78.8% | 81.1% |
| 3497350 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.57 | 50.0 | 3.63e-01 | 100.0% | 59.5% |
| 3278853 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 45.0 | 4.56e-01 | 87.9% | 96.9% |
| 3936845 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.56 | 48.0 | 3.68e-01 | 95.5% | 64.5% |
| 3831470 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.56 | 42.0 | 2.83e-01 | 81.8% | 97.5% |
| 3801304 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 49.0 | 3.87e-01 | 98.5% | 77.9% |
| 3624962 | 5.1.4.30 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LLGL | 0.56 | 44.0 | 2.45e-01 | 84.8% | 44.0% |
| 4079885 | 274.1.1.25 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF | 0.56 | 40.0 | 3.62e-01 | 77.3% | 85.3% |
| 3057024 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 42.0 | 2.64e-01 | 83.3% | 92.5% |
| 4937423 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 46.0 | 4.35e-01 | 98.5% | 85.9% |
| 3508120 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.55 | 47.0 | 3.99e-01 | 98.5% | 93.9% |
| 3518153 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.55 | 46.0 | 3.96e-01 | 95.5% | 94.5% |
| 3743943 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.55 | 40.0 | 2.49e-01 | 80.3% | 21.8% |
| 4384294 | 2.1.1.60 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N | 0.54 | 29.0 | 3.48e-01 | 81.8% | 80.0% |
| 5025256 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.54 | 42.0 | 2.70e-01 | 89.4% | 15.4% |
| 3700578 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.54 | 39.0 | 4.02e-01 | 77.3% | 93.3% |
| 3564372 | 5.1.4.295 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_DCAF12 | 0.54 | 41.0 | 2.55e-01 | 84.8% | 80.4% |
| 4030493 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.54 | 42.0 | 3.58e-01 | 83.3% | 76.2% |
| 3509350 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.54 | 45.0 | 3.67e-01 | 97.0% | 82.1% |
| 5034888 | 9.23.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 | 0.53 | 42.0 | 3.83e-01 | 95.5% | 97.0% |
| 3713696 | 5.1.4.297 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 | 0.51 | 39.0 | 2.51e-01 | 86.4% | 86.7% |
| 3394097 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.51 | 41.0 | 3.57e-01 | 87.9% | 73.0% |