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SRR1747035_scaffold_3_prodigal-single.1__X__X__00278
Bact-VirSRR1747035_scaffold_3_prodigal-single.1__X__X__00278
Identity
- Kingdom:
- phage
Quality
84.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-65
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2j0nB00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.84 | 59.0 | 4.06e-01 | 73.3% | 24.6% |
| 3hdoA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 43.0 | 3.27e-01 | 71.7% | 33.8% |
| 1e6vB02 | 1.20.840.10 | Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal | 0.61 | 42.0 | 2.62e-01 | 71.7% | 36.7% |
| 3getA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 40.0 | 3.42e-01 | 70.0% | 45.7% |
| 4qa8A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.56 | 40.0 | 2.77e-01 | 75.0% | 97.6% |
| 6jpaE00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.56 | 49.0 | 3.53e-01 | 96.7% | 76.3% |
| 4czwA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 36.0 | 2.17e-01 | 70.0% | 11.5% |
| 4cswA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.51 | 44.0 | 3.15e-01 | 95.0% | 72.7% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028765 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.81 | 49.0 | 3.58e-01 | 83.3% | 24.7% |
| 4992898 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.81 | 46.0 | 2.84e-01 | 76.7% | 11.7% |
| 5044090 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.76 | 69.0 | 5.01e-01 | 100.0% | 61.9% |
| 4975931 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.76 | 64.0 | 4.52e-01 | 90.0% | 58.2% |
| 5045441 | 192.2.1.88 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › NFACT_N | 0.76 | 63.0 | 4.51e-01 | 90.0% | 58.2% |
| 4480144 | 129.1.1.2 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH | 0.75 | 38.0 | 2.83e-01 | 73.3% | 21.5% |
| 4967607 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.74 | 67.0 | 4.88e-01 | 100.0% | 65.8% |
| 4931058 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.73 | 67.0 | 4.76e-01 | 100.0% | 65.3% |
| 5083918 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.69 | 63.0 | 4.77e-01 | 98.3% | 46.2% |
| 5024938 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.69 | 61.0 | 4.69e-01 | 96.7% | 50.8% |
| 5035483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.69 | 60.0 | 4.30e-01 | 96.7% | 50.0% |
| 5031480 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.68 | 51.0 | 3.35e-01 | 81.7% | 36.5% |
| 4928595 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.60 | 45.0 | 3.62e-01 | 78.3% | 46.7% |
| 4054705 | 7577.1.1.28 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2, Cys_Met_Meta_PP | 0.56 | 41.0 | 2.41e-01 | 76.7% | 26.4% |
| 4938445 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.55 | 39.0 | 3.06e-01 | 76.7% | 63.0% |
| 3443169 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.55 | 46.0 | 3.34e-01 | 93.3% | 61.2% |
| 5037849 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.53 | 37.0 | 2.89e-01 | 73.3% | 44.0% |