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SRR1747035_scaffold_3_prodigal-single.1__X__X__00288

Bact-Vir

SRR1747035_scaffold_3_prodigal-single.1__X__X__00288

Identity

Kingdom:
phage

Quality

79.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-74
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 58.0 4.59e-01 100.0% 39.7%
2g9wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 61.0 6.34e-01 100.0% 89.6%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 62.0 5.82e-01 100.0% 70.5%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 59.0 4.78e-01 100.0% 42.8%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 70.0 6.30e-01 100.0% 77.6%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 58.0 5.88e-01 100.0% 81.9%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 65.0 6.30e-01 100.0% 84.0%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 55.0 4.23e-01 100.0% 35.3%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 65.0 6.55e-01 100.0% 94.5%
3majA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 53.0 5.75e-01 100.0% 90.0%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 5.48e-01 100.0% 75.3%
2v9vA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 62.0 6.38e-01 100.0% 97.1%
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 5.59e-01 100.0% 79.5%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.73 59.0 4.57e-01 100.0% 40.4%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 60.0 5.93e-01 100.0% 86.7%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 59.0 5.57e-01 100.0% 74.4%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 5.75e-01 100.0% 92.3%
4d7kA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 5.09e-01 100.0% 62.5%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 5.86e-01 100.0% 81.4%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 62.0 5.58e-01 100.0% 70.3%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.70 63.0 4.66e-01 100.0% 45.6%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.63e-01 100.0% 91.0%
3dptB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 5.99e-01 100.0% 98.6%
3go5A04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.69e-01 100.0% 96.8%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 5.26e-01 100.0% 82.2%
4yo2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 5.49e-01 100.0% 87.3%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 4.88e-01 100.0% 71.6%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 4.47e-01 100.0% 65.3%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.73e-01 100.0% 80.6%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.65 52.0 4.81e-01 100.0% 67.7%
1d8jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 5.07e-01 100.0% 84.0%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 5.07e-01 100.0% 90.4%
3by6C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.85e-01 100.0% 88.3%
1pzmA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 43.0 3.35e-01 77.8% 90.6%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.49e-01 100.0% 72.5%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 4.17e-01 97.2% 75.0%
5kbpA01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.54 43.0 3.01e-01 95.8% 23.7%
2k3pA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.54 45.0 3.94e-01 97.2% 73.3%
2ppqA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.53 45.0 3.30e-01 97.2% 94.4%
1wteB01 1.10.3250.10 Mainly Alpha › Orthogonal Bundle › type ii restriction endonuclease, domain 1 › type ii restriction endonuclease, domain 1 0.52 40.0 3.28e-01 84.7% 63.9%
7eqeB01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 45.0 3.47e-01 100.0% 63.3%
4huqS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.50 43.0 3.40e-01 100.0% 78.7%
1wvtA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.50 43.0 3.48e-01 98.6% 83.1%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924587 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 69.0 6.82e-01 98.6% 85.3%
5044888 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.83 62.0 4.90e-01 100.0% 40.7%
5044288 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 68.0 6.59e-01 100.0% 81.2%
4927131 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 63.0 5.84e-01 100.0% 66.7%
3580494 101.1.2.499 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_MCM7 0.81 69.0 7.02e-01 100.0% 95.7%
3617979 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 68.0 6.74e-01 98.6% 88.0%
4956461 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 70.0 6.63e-01 100.0% 80.7%
3824428 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.80 59.0 4.81e-01 100.0% 43.1%
4998335 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 59.0 5.83e-01 97.2% 74.7%
5027549 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.79 59.0 5.75e-01 100.0% 71.2%
5077926 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.79 59.0 4.73e-01 100.0% 42.2%
3515490 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 64.0 6.36e-01 100.0% 85.3%
3713972 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 67.0 5.73e-01 100.0% 59.1%
3439131 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.78 71.0 6.11e-01 100.0% 65.1%
3224625 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.78 61.0 6.02e-01 100.0% 80.0%
4990706 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 57.0 6.29e-01 95.8% 100.0%
3507464 101.1.2.397 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.78 65.0 6.21e-01 100.0% 79.8%
4959343 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.77 70.0 6.47e-01 100.0% 83.3%
3741850 101.1.2.499 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_MCM7 0.77 67.0 6.86e-01 98.6% 98.6%
4982553 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.77 68.0 5.93e-01 100.0% 65.7%
3613393 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 63.0 6.14e-01 100.0% 81.2%
4966021 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 65.0 6.31e-01 100.0% 83.7%
5024578 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 51.0 6.00e-01 84.7% 100.0%
5075649 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 64.0 6.13e-01 100.0% 78.3%
3857154 101.1.2.151 ↗ alpha arrays › HTH › HTH › winged helix domain › COR 0.75 68.0 5.70e-01 100.0% 65.0%
4369318 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 59.0 6.33e-01 98.6% 100.0%
4950232 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 60.0 5.65e-01 100.0% 71.1%
None — 0.75 66.0 6.40e-01 100.0% 87.5%
3497894 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.74 60.0 5.73e-01 100.0% 75.9%
3508000 101.1.2.466 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_MCM3_C 0.74 62.0 6.45e-01 97.2% 100.0%
4981596 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 59.0 6.05e-01 100.0% 91.4%
3584275 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 5.63e-01 100.0% 67.0%
3580194 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 56.0 5.47e-01 100.0% 73.8%
5042509 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 59.0 5.82e-01 100.0% 84.0%
4315549 101.1.2.71 ↗ alpha arrays › HTH › HTH › winged helix domain › RuvB_C 0.74 55.0 4.98e-01 100.0% 58.0%
3971896 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 62.0 5.97e-01 100.0% 82.5%
3300459 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.73 66.0 4.75e-01 100.0% 36.0%
3578447 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.73 64.0 4.68e-01 100.0% 36.4%
3583168 101.1.2.490 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 0.72 63.0 5.53e-01 100.0% 64.5%
4304583 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 57.0 5.95e-01 100.0% 98.5%
4979200 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 48.0 5.53e-01 81.9% 100.0%
4932302 101.1.2.913 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.71 58.0 5.62e-01 100.0% 81.2%
3638065 101.1.2.98 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1 0.71 62.0 5.09e-01 100.0% 53.3%
3597985 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 5.62e-01 100.0% 82.5%
4028933 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 5.92e-01 100.0% 92.9%
3283039 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 62.0 4.93e-01 100.0% 49.0%
4984969 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 63.0 4.36e-01 100.0% 64.5%
5001123 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 4.86e-01 100.0% 62.1%
3905943 101.1.2.107 ↗ alpha arrays › HTH › HTH › winged helix domain › STN1_2 0.69 61.0 6.14e-01 100.0% 98.6%
2417725 101.1.2.467 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_Rok 0.69 55.0 4.95e-01 100.0% 63.1%
3528416 101.1.2.375 ↗ alpha arrays › HTH › HTH › winged helix domain › MOV-10_N 0.68 58.0 5.76e-01 100.0% 92.0%
4260815 101.1.2.375 ↗ alpha arrays › HTH › HTH › winged helix domain › MOV-10_N 0.68 57.0 5.54e-01 100.0% 85.0%
3743678 148.1.3.41 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM5_C 0.67 53.0 5.40e-01 100.0% 91.4%
4994947 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 5.34e-01 100.0% 83.7%
5002376 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.33e-01 98.6% 57.1%
4985937 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 4.57e-01 100.0% 62.5%
5053558 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.62 53.0 4.36e-01 98.6% 82.1%
4595468 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.60 48.0 4.96e-01 98.6% 100.0%
3087357 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 45.0 4.25e-01 95.8% 76.1%
4988084 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 4.27e-01 87.5% 87.7%
3708093 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 45.0 4.30e-01 100.0% 84.9%
3950059 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.52 41.0 4.21e-01 100.0% 92.6%